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Liste des publications
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Publications summary |
Publication list
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Authors of peer-reviewed publications are indicated in red
Publications in the domain of Philosophy, History of Sciences and Ethics
A Danchin
A brief history of genome research and bioinformatics in France
Bioinformatics (2000) 16: 65-75
A
Danchin
L'identité génétique
Quatrième
conférence de l'Université de tous les savoirs, cycle: Qu'est-ce que
la vie?
coordonné par Yves Michaud, Odile Jacob (2000) 1: 59-68
A
Danchin
Etapes et devenir de la révolution génomique
Regards mai 2000
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A Danchin |
The natural war [book review: The Biology of Doom by Ed Regis] | |
EMBO Reports (2000) 1: 216 ![]() |
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A Danchin |
Zi ran yu ren wei (en Chinois) (![]() |
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Ke xue yu ren wen, Transcultural Dialogue (2000), Yue Daiyun, 樂 黛雲 (乐 黛云) ed., Beijing University Press 5: 1-9 |
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A Danchin |
![]() In: Yin te wang chuang xin ji tou zi - lai zi hua er jie he gui gu de bao gao |
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published by the Chinese Association for
Science and Business (![]() |
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A Danchin, A Sekowska |
Expression profiling in reference bacteria: dreams and reality | |
Genome Biol (2000) 1:
REVIEWS1024 ![]() ![]() |
A Danchin, P
Guerdoux-Jamet, I Moszer, P Nitschké
Mapping the bacterial cell architecture into the chromosome
Philos Trans R Soc Lond B Biol Sci (2000) 355: 179-190
V Norris, J Fralick,
A Danchin
A SeqA hyperstructure and its interactions direct the replication and
sequestration of DNA
Mol Microbiol (2000) 37: 696-702
EPC Rocha, A
Sekowska, A Danchin
Sulphur islands in the Escherichia coli genome: markers of the
cell's architecture?
FEBS Lett (2000) 476: 8-11
EPC Rocha, P
Guerdoux-Jamet, I Moszer, A Viari, A Danchin
Implication of gene distribution in the bacterial chromosome for the
bacterial cell factory
J Biotechnol (2000) 78: 209-219
A Sekowska, A
Danchin, JL Risler
Phylogeny of related functions: the case of polyamine biosynthetic
enzymes
Microbiology (2000) 146: 1815-1828
A Sekowska, JY
Coppée, JP Le Caer, I Martin-Verstraete, A Danchin
S-adenosylmethionine decarboxylase of Bacillus subtilis is
closely related to archaebacterial counterparts
Mol Microbiol (2000) 36: 1135-1147
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A Sekowska, HF Kung, A Danchin |
Sulfur metabolism in Escherichia coli and related bacteria: facts and fiction | |
J Mol Microbiol Biotechnol (2000) 2: 145-177 ![]() |
C Tendeng, C Badaut,
E Krin, P Gounon, S Ngo, A Danchin, S Rimsky, P Bertin
Isolation and characterization of vicH, encoding a new
pleiotropic regulator in Vibrio cholerae
J Bacteriol (2000) 182: 2026-2032
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P Bertin, F Hommais,
E Krin, O Soutourina, C Tendeng, S Derzelle, A Danchin
H-NS and H-NS-like proteins in Gram-negative bacteria and their multiple
role in the regulation of bacterial metabolism
Biochimie (2001) 83: 235-241
JY Coppée, S Auger,
E Turlin, A Sekowska, JP Le Caer, V Labas, V Vagner, A Danchin, I
Martin-Verstraete
Sulfur-limitation-regulated proteins in Bacillus subtilis: a
two-dimensional gel electrophoresis study
Microbiology (2001) 147: 1631-1640
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Nature et artifice [Nature and Artifice] | |
Alliage (2001) 45-46: 125-133 ![]() |
A
Danchin
II modi di produzione del sapere: esiste une specificità occidentale?
In " Tecnocrazia "
Keiron (2001) 9: 52-62
A Danchin
Bacillus subtilis
In: “Encyclopedia of Genetics”, Academic Press, New York (2001): 135-144
A Danchin
Bacillus subtilis
Biotechnology Volume 5b: Genome Projects of Model Organisms (HJ Rehm, G
Reed, A Puehler, C Sensen, editors), Wiley-VCH (2001) 12-16
MF Hullo, I Moszer,
A Danchin, I Martin-Verstraete
CotA of Bacillus subtilis is a copper-dependent laccase
J Bacteriol (2001) 183: 5426-5430
MF Hullo, A Sekowska, E Presecan-Siedel, JY Coppée, I
Martin-Verstraete, P Glaser & A Danchin
Screening for growth and lacZ reporter gene induction with metal
ions and chelators, amino-acid analogs, antibiotics, inhibitors of
oxidative phosphorylation and miscellaneous stress factors
In: " Functional Analysis of Bacterial Genes, A Practical Manual " (W
Schumann, SD Ehrlich, N Ogasawara eds), J Wiley & Sons, Ltd (2001) 9B:
87-93
E Krin, F Hommais, O Soutourina, S Ngo, A
Danchin, P Bertin
Description and application of a rapid method for genomic DNA direct
sequencing
FEMS Microbiol Lett (2001) 199: 229-233
I Moszer & A Danchin
List of Bacillus subtilis unknown genes of known function
In: " Functional Analysis of Bacterial Genes, A Practical Manual " (W
Schumann, S D Ehrlich, N Ogasawara eds), J Wiley & Sons, Ltd (2001)
30: 293-326
EPC Rocha, I Moszer, M Klaerr-Blanchard, A Sekowska, C Médigue, A
Viari & A Danchin
In silico Genome Analysis
In: " Functional Analysis of Bacterial Genes, A Practical Manual " (W
Schumann, S D Ehrlich, N Ogasawara eds), J Wiley & Sons, Ltd (2001)
2: 5-19
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A Sekowska, L
Mulard, S Krogh, JK Tse, A Danchin MtnK, methylthioribose kinase, is a starvation-induced protein in Bacillus subtilis BMC Microbiol (2001) 1: 15 ![]() |
E Turlin, M
Perrotte-Piquemal, A Danchin, F Biville
Regulation of the early steps of 3-phenylpropionate catabolism
in Escherichia coli
J Mol Microbiol Biotechnol (2001) 3: 127-133
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S Auger, WH
Yuen, A Danchin, I Martin-Verstraete The metIC operon involved in methionine biosynthesis in Bacillus subtilis is controlled by transcription antitermination Microbiology (2002) 148: 507-518 ![]() |
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S
Auger, A Danchin, I Martin-Verstraete Global expression profile of Bacillus subtilis grown in the presence of sulfate or methionine J Bacteriol (2002) 184: 5179-5186 ![]() ![]() |
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S
Bocs, A Danchin, C Médigue Re-annotation of genome microbial coding-sequences: finding new genes and inaccurately annotated genes BMC Bioinformatics (2002) 3: 5 ![]() |
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S Brunak, A
Danchin, M Hattori, H Nakamura, K Shinozaki, T Matise & D
Preuss Nucleotide sequence database policies Science (2002) 298: 1333 ![]() |
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A
Danchin Not every truth is good. The dangers of publishing knowledge about potential bioweapons EMBO Rep (2002) 3: 102-104 ![]() |
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![]() Quelques problèmes éthiques posés par la biologie Alliage (2002) 52: ![]() |
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S Derzelle, E
Duchaud, F Kunst, A Danchin, P Bertin Identification, characterization, and regulation of a cluster of genes involved in carbapenem biosynthesis in Photorhabdus luminescens Appl Environ Microbiol (2002) 68: 3780-3789 ![]() ![]() |
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S
Noria, A Danchin Just so genome stories: what does my neighbor tell me Proceedings of the Uehara Memorial Foundation Symposium: Genome Science: towards a new paradigm? H Yoshikawa, N Ogasawara, N Satoh, eds. Elsevier Science BV(2002) International congress series 1246: 3-13 ![]() |
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F Hommais, C
Laurent-Winter, V Labas, E Krin, C Tendeng, O Soutourina, A Danchin, P
Bertin
Effect of mild acid pH on the functioning of bacterial membranes
in Vibrio cholerae
Proteomics (2002) 2: 571-579
E Krin, O Sismeiro,
A Danchin, PN Bertin
The regulation of Enzyme IIA(Glc) expression controls adenylate
cyclase activity in Escherichia coli
Microbiology (2002) 148: 1553-1559
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C Médigue, BC Wong, MC Lin, S Bocs, A Danchin |
The secE gene of Helicobacter pylori | |
J Bacteriol (2002) 184:
2837-2840 ![]() |
OA Soutourina, E
Krin, C Laurent-Winter, F Hommais, A Danchin, PN Bertin
Regulation of bacterial motility in response to low pH in Escherichia
coli: the role of H-NS protein
Microbiology (2002) 148: 1543-1551
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X Xia, T Wei, Z Xie, A Danchin |
Genomic changes in nucleotide and dinucleotide frequencies in Pasteurella multocida cultured under high temperature | |
Genetics (2002) 161: 1385-1394
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A Danchin |
The Delphic Boat. What genomes tell us, Harvard University Press (2003) | |
[comment in EMBO
Reports, comment in Nature
Genetics, comment in Nature ![]() ![]() ![]() |
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F Biville, T Oshima,
H Mori, Y Kawagoe, O Bouvet, MN Rager, M Perrotte-Piquemal, A Danchin
Escherichia coli response to exogenous pyrophosphate and
analogs
J Mol Microbiol Biotechnol (2003) 5: 37-45
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A Danchin |
Genomes and evolution | |
Curr Issues Mol Biol (2003) 5:
37-42 ![]() |
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A
Danchin
Une nouvelle grippe pourrait faire des ravages dans le monde entier
La Recherche (2003) 365: 45
C Gagyi, N
Bucurenci, O Sirbu, G Labesse, M Ionescu, A Ofiteru, L Assairi, S
Landais, A Danchin, O Barzu, AM Gilles
UMP kinase from the Gram-positive bacterium Bacillus subtilis is
strongly dependent on GTP for optimal activity
Eur J Biochem (2003) 270: 3196-3204
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EPC Rocha, A
Danchin Gene essentiality determines chromosome organisation in bacteria Nucleic Acids Res (2003) 31: 6570-6577 ![]() |
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EPC Rocha, J
Fralick, G Vediyappan, A Danchin, V Norris A strand-specific model for chromosome segregation in bacteria Mol Microbiol (2003) 49: 895-903 ![]() ![]() |
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EPC Rocha, A
Danchin Essentiality, not expressiveness, drives gene-strand bias in bacteria Nature Genetics (2003) 34: 377-378 ![]() |
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V Tosato, K Gjuracic, K Vlahovicek, S Pongor, A Danchin, CV Bruschi |
The DNA secondary structure of the Bacillus subtilis genome | |
FEMS Microbiol Lett (2003) 218:
23-30 ![]() |
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YL Yap, XW Zhang, A Danchin |
Relationship of SARS-CoV to other pathogenic RNA viruses explored by tetranucleotide usage profiling | |
BMC Bioinformatics (2003) 4: 43
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KY Yuen, G Pascal, SS Wong, P Glaser, PC Woo, F Kunst, JJ Cai, EY Cheung, C Médigue, A Danchin |
Exploring the Penicillium marneffei genome | |
Arch Microbiol (2003) 179:
339-353 ![]() |
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P Burguière, S
Auger, MF Hullo, A Danchin, I Martin-Verstraete
Three different systems participate in L-cystine uptake in Bacillus
subtilis
J Bacteriol (2004) 186: 4875-4884
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A Danchin |
The animal in the machine: is there a geometric program in the genetic program? | |
Proceedings of the Deuxièmes Entretiens de Bures (E Westhof, N Hardy, eds) World Scientific (2004) pp 375-399 |
A Danchin, S Noria |
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Genome structures, operating systems and the
image of the machine
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In: Molecules
in time and space. Bacterial shape, division and phylogeny
(M Vicente, J Tamames, A Valencia, J Mingorance, eds) Kluver
(2004) pp 195-208 ![]() |
S Derzelle, S Ngo, E
Turlin, E Duchaud, A Namane, F Kunst, A Danchin, P Bertin, JF Charles
AstR-AstS, a new two-component signal transduction system,
mediates swarming, adaptation to stationary phase and phenotypic
variation in Photorhabdus luminescens
Microbiology (2004) 150: 897-910
S Derzelle, E
Turlin, E Duchaud, S Pages, F Kunst, A Givaudan, A Danchin
The PhoP-PhoQ two-component regulatory system of Photorhabdus
luminescens is essential for virulence in insects
J Bacteriol (2004) 186: 1270-1279
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F Hommais, E
Krin, JY Coppée, C Lacroix, E Yeramian, A Danchin, P Bertin GadE (YhiE): a novel activator involved in the response to acid environment in Escherichia coli Microbiology (2004) 150: 61-72 ![]() ![]() |
MF Hullo, S Auger, E
Dassa, A Danchin, I Martin-Verstraete
The metNPQ operon of Bacillus subtilis encodes
an ABC permease transporting methionine sulfoxide, D- and L-methionine
Res Microbiol (2004) 155: 80-86
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H
Ashida, A Danchin, A Yokota |
A Danchin
Genome diversity: A grammar of microbial genomes
ComPlexUs (2004/2005) 2: 61-70
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G Fang, C Ho, YW Qiu, V Cubas, Z Yu, C Cabau, F Cheung, I Moszer, A Danchin |
Specialized microbial databases for inductive exploration of microbial genome sequences | |
BMC Genomics (2005) 6: 14 ![]() ![]() |
A Pühler, D Jording, J Kalinowski, D Buttgereit, R Renkawitz-Pohl, L
Altschmied, A Danchin, A Sekowska, H Feldmann, HP Klenk, M Kröger
Genome projects on model organisms
Handbook of Genome Research, Genomics, Proteomics, Metabolomics,
Bioinformatics, Ethical and Legal Issues, CW Sensen ed
Wiley-VCH (2005) 1: 3-43
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G Pascal, C Médigue, A Danchin |
Universal biases in protein composition of model prokaryotes | |
Proteins (2005) 60: 27-35 ![]() ![]() |
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G
Fang, EPC Rocha, A Danchin |
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P Burguière, J Fert, I Guillouard, S Auger S, A
Danchin, I Martin-Verstraete
Regulation of the Bacillus subtilis ytmI operon, involved in
sulfur metabolism.
J Bacteriol (2005) 187: 6019-6030
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E Larsabal, A Danchin |
Genomes are covered with ubiquitous 11bp periodic patterns, the "class A flexible patterns" | |
BMC Bioinformatics (2005) 6:
206 ![]() |
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CH You, HY Lu, A Sekowska, G Fang, YP Wang, AM Gilles, A Danchin |
The two authentic methionine aminopeptidase genes are differentially expressed in Bacillus subtilis | |
BMC Microbiology (2005) 5:
57 ![]() |
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XW Zhang, YL Yap, D Wei, F Chen, A Danchin |
Molecular diagnosis of human cancer type by gene expression profiles and independent component analysis | |
Eur J Hum Genet (2005) 13:
1303-1311 ![]() |