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CM Chan, A Danchin, P Marlière, A
Sekowska
Paralogous metabolism: S-alkyl-cysteine degradation in Bacillus
subtilis
Environ Microbiol (2014) 16: 101-117
A Danchin, A Sekowska
The logic of metabolism and its fuzzy consequences
Environ Microbiol (2014) 16: 19-28
A Danchin, A Sekowska
Constraints in the design of the synthetic bacterial
chassis
Methods in Microbiology (2013) 40: 39-68
E Belda, A Sekowska, F Le Fèvre, A
Morgat, D Mornico, C Ouzounis, D Vallenet, C Médigue, A
Danchin
An updated metabolic view of the Bacillus subtilis
168 genome
Microbiology (2013) 159: 757-770. doi:
10.1099/mic.0.064691-0. IF 2.852
CG Acevedo-Rocha, G Fang, M
Schmidt, DW Ussery, A Danchin
From essential to persistent genes: a functional approach
to constructing synthetic life
Trends in Genetics (2013) 14: 1612-1623. doi:
10.1016/j.tig.2012.11.001. IF 9.772
RM Couture, A Sekowska, G Fang, A
Danchin
Linking selenium biogeochemistry to the sulfur-dependent
biological detoxification of arsenic
Environ Microbiol (2012) 14: 1612-1623. doi:
10.1111/j.1462-2920.2012.02758.x. 
IF 5.756
M
Schmidt, M Porcar, V Schächter, A Danchin, I
Mahmutoglu
Biofuels, pp
L Pei, M Morange, R Armstrong,
A Danchin, M Porcar
Biomaterials, pp
In: Synthetic Biology. Industrial and
Environmental Applications (Editor M
Schmidt), Wiley VCH, Weinheim (2012) |
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S Engelen, D Vallenet, C Médigue, A
Danchin
Distinct
co-evolution patterns of genes associated to DNA
polymerase III DnaE and PolC
BMC Genomics (2012) 13: 69. IF 4.397
Karsch-Mizrachi I, Nakamura Y,
Cochrane G; International Nucleotide Sequence Database
Collaboration
Miyano S, Nakamura H, Sugano S, Danchin A, Savakis B,
Weissenbach J, Weng Z, Salzberg S
The International
Nucleotide Sequence Database Collaboration
Nucleic Acids Research (2012) 40: D33-D37 IF 8.278
MF Liu, S Cescau, U Mechold, J
Wang, D Cohen, A Danchin, HJ Boulouis, F Biville
Identification of a new nanoRNase in Bartonella
Microbiology (2012) 158: 886-895. IF
2.852
E Toledano, V Ogryzko, A Danchin, D
Ladant, U Mechold
3’‐5’phosphoadenosine phosphate is an inhibitor of
Poly(ADPribose) Polymerase 1 and a potential mediator of
the lithium-dependent inhibition of PARP‐1 in vivo
Biochemical Journal (2012) 443: 485-490. IF
4.654
A Danchin
Synthetic biology's flywheel
EMBO Reports (2012) 13: 92. IF
7.189
A Danchin
Scaling up synthetic biology: Do not forget the chassis
FEBS Letters (2012) 586: 2129–2137.
IF 3.582
G Postic, A Danchin, U Mechold
Characterization of NrnA homologs from Mycobacterium
tuberculosis and Mycoplasma pneumoniae
RNA (2012) 18: 155-165 IF 5.088
Y Wang, JK Yang, OO Lee, TG Li, A
Al-Suwailem, A Danchin, P-Y Qian
Bacterial niche-specific genome expansion Is coupled with
highly frequent gene disruptions in deep-sea sediments
PLoS ONE (2011) 6: e29149 IF 4.244
A Danchin, PM Binder, S Noria
Antifragility and tinkering in biology (and in business):
Flexibility provides an efficient epigenetic way to manage
risk
Genes
(2011), 2: 998-1016;
doi:10.3390/genes2040998
 A
Danchin
Un démon entre en scène
Postface au livre de Jérôme Segal Le Zéro et le Un (2011)
Editions Matériologiques.
M Porcar, A Danchin, V de Lorenzo,
VA dos Santos, N Krasnogor, S Rasmussen, A Moya
The ten grand challenges of synthetic life
Systems and Synthetic Biology (2011) 5 :
1-9
H Rohde, J Qin, Y Cui, D Li, NJ
Loman, M Hentschke, W Chen, Fei Pu, Y Peng, J Li, F Xi,
S Li, Y Li, Z Zhang, X Yang, M Zhao, Peng Wang, Y Guan,
Z Cen, X Zhao, M Christner, R Kobbe, S Loos, J Oh, L
Yang, A Danchin, GF Gao, Y Song, Y Li, H Yang, J Wang, J
Xu, the E. coli O104:H4 Genome Analysis Crowd-sourcing
consortium, MJ Pallen, J Wang, M Aepfelbacher, R Yang
Open-source genomics of an isolate from a german family
outbreak of Shiga-toxin-producing Escherichia coli
O104:H4
New England Journal of Medicine (2011) 365:
718-724 IF 51.658
PM Binder, A Danchin
Life's demons: information and order in biology. What
subcellular machines gather and process the information
necessary to sustain life?
EMBO Reports (2011) 12: 495-499 IF
7.189
Y Wang, J Yang, OO Lee, S Dash, SC
Lau, A Al-Suwailem, TY Wong, A Danchin, PY Qian
Hydrothermally generated aromatic compounds are consumed
by bacteria colonizing in Atlantis II Deep of the Red Sea.
ISME J (2011) 5: 1652-1659 IF 8.951
F Piette, S D'Amico, G
Mazzucchelli, A Danchin, P Leprince, G Feller
Life in the cold: a proteomic study of cold-repressed
proteins in the Antarctic bacterium Pseudoalteromonas
haloplanktis TAC125.
Applied and Environmental Microbiology (2011) 77:
3881-3883 IF 3.678
A
Danchin
Les gènes du démon de Maxwell : est-il possible de
construire une usine cellulaire ? Maxwell’s demon’s genes:
Can we build a cell factory?
Comptes Rendus de l'Académie des Sciences, Chimie
(2011) 14: 413-419 IF 1.803
B Wilmes, H Kock, S Glagla, D
Albrecht, B Voigt, S Markert, A Gardebrecht, R Bode, A
Danchin, G Feller, M Hecker, T Schweder
Cytoplasmic and periplasmic proteomic signatures of
exponentially growing cells of the psychrophilic bacterium
Pseudoalteromonas haloplanktis TAC125.
Applied and Environmental Microbiology (2011) 77:
1276-1283 IF 3.678
A Danchin
Science and arsenic's fool's gold: a toxic broth
Journal
of Cosmology (2010) 13: 3617-3620
Abstract: Making stable
informational polymers in water at 300K limits chemical
variations within extremely narrow borders. This is why
the basic atoms of life — those that are found in
meteoritic molecules — are hydrogen, carbon, nitrogen
and oxygen. In these same conditions, management of
energy to support life used the unique property of
phosphorus to make energy-rich metastable phosphoester
or polyphosphate bonds. Analysis of the genome of
arsenic-loving bacteria suggests that arsenic can
nevertheless be accumulated in bacteria via formation of
innocuous derivatives that may decorate inert (mostly
non informational) biopolymers. However, arsenic cannot
replace phosphorus in this core function of life. This
has been previously firmly established by numerous
biochemical experiments. Likewise, recent claims by
Wolfe-Simon et al. (2010) that this replacement could
happen, have not been experimentally verified, and are
based on experiments lacking proper controls; the
purpose of which was to substantiate these beliefs.
However, the authors are not sole to be blamed, but the
journals that try to maintain their high impact factors
at all cost, publishing articles that should never have
reached the public.
E Krin, A Danchin, O Soutourina
Decrypting the H-NS-dependent regulatory cascade of acid
stress resistance in Escherichia coli
BMC
Microbiology (2010) 161: 363-371  IF
3.104
A Danchin
A path from predation to mutualism
Molecular Microbiology (2010) 77:
1346-1350 IF 4.961
F Piette, S D’Amico, C Struvay, G
Mazzucchelli, J Renaut, ML Tutino, A Danchin, P
Leprince, G Feller
Proteomics of life at low temperatures: trigger
factor is the primary chaperone in the Antarctic bacterium
Pseudoalteromonas haloplanktis TAC125
Molecular Microbiology (2010) 76: 120-132
IF 4.961
A Danchin
Motivated research
EMBO Reports (2010) 11: 488 IF 7.189
Opening: Three years ago, a
senior politician attended his country’s Annual Congress
for the Advancement of Science to give the introductory
lecture. He asked the attending scientists to make
science and research more attractive to young students
and the general public, and asked his countrymen to
support scientists to address the urgent challenges of
global climate change, energy needs and dwindling water
resources. It was neither a European nor a US
politician, but the Indian Prime Minister Manmohan Singh
who made this speech about the relationship between
research and its practical applications. This is such an
important topic that one might think it deserves
appropriate attention in Europe, yet we fail to address
it properly. Instead, we just discuss how science should
serve society or contribute to the ‘knowledge-based
economy’, or how ‘basic’ or ‘fundamental’ research is
opposed to ‘applied’ or ‘industrial’ research and how
funding for ‘big science’ comes at the expense of
‘little academic’ research.
A Danchin
Perfect
time, or perfect crime?
EMBO Reports (2010) 11: 74 IF 7.189
E Krin, A Danchin, O Soutourina
RcsB plays a central role in H-NS-dependent regulation of
motility and acid stress resistance in Escherichia
coli
Res Microbiol (2010) 161: 363-371 IF
2.889
A Danchin, G Fang
Babies are born very young. The synthesis of change
Journal of Cosmology (2010) 7:
May 2010 Artificial Life
M Vayssier-Taussat, D Le Rhun, HK
Deng, F Biville, S Cescau, A Danchin, G Marignac, E
Lenaour, Boulouis HJ, Mavris M, Arnaud L, Yang H, Wang
J, M Quebatte, P Engel, H Saenz, C Dehio
The Trw type IV secretion system of Bartonella
mediates host-specific adhesion to erythrocytes
PLoS Pathogens
(2010) 6:e1000946 IF 8.136
A Danchin
A challenge to vaccinology: Living organisms trap
information
Vaccine (2009) 27S6: G13-G16 IF 3.492
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