Publications

Do not hesite to ask me for the pdf versions of our articles. You can also consult my Google Scholar profile.

Scientific articles

2022

  • 26. Da Silva O, Ayata SD, Ser-Giacomi E, Leconte J, Pelletier E, Fauvelot C, Madoui MA, Guidi L, Lombard F, Bittner L (2022) Genomic differentiation of three pico-phytoplankton species in the Mediterranean Sea. Environmental Microbiology, 1-14. Available from: https://doi.org/10.1111/1462-2920.16171
  • 25. Orenstein E, Ayata SD, Maps F, et al. Machine learning techniques to characterize functional traits of plankton from image data. Limnology & Oceanography. 67: 1647-1669 https://doi.org/10.1002/lno.12101
  • 24. Sonnet V, Guidi L, Mouw CB, Puggioni G, Ayata SD (2022) Length, width, shape regularity, and chain structure: time series analysis of phytoplankton morphology from imagery. Limnology & Oceanography.67:1850-1864. https://doi.org/10.1002/lno.12171
  • 23. Soviadan YD, Benedetti F, Brandao MC, Ayata SD, Irisson JO, Kiko R, Lombard F, Gnandi K, Stemmann L. (2022) Contrasted patterns of mesozooplankton community composition associated with vertical fluxes in the upper kilometer of the global ocean. Progress in Oceanography. https://doi.org/10.1016/j.pocean.2021.102717
  • 22. Irisson JO, Ayata SD, Lindsay DJ, Karp-Boss L, Stemmann L. (2022) Machine Learning for the study of plankton and marine snow from images. Annual Reviews of Marine Sciences, volume 14. https://doi.org/10. 1146/annurev-marine-041921-013023

2021

  • 21. Faure E, Ayata SD*, Bittner L* (2021) Towards omics-based predictions of planktonic functional composition from environmental data. Nature Communications. 12, 4361 (2021). https://doi.org/10.1038/s41467-021-24547-1 *co-last authors.
  • 20. Vilgrain L, Maps F, Picheral M, Babin M, Irisson JO*, Ayata SD* (2021) Trait-based approach on zooplankton individual images reveals contrasted ecological patterns along ice melt dynamics. Limnology & Oceanography. 66: 1155-1167. https://doi.org/10.1002/lno.11672 *co-last authors.
  • 19. Martini S, Faure E, Larras F, Boye A, Aberle N, Bacouillard L, Beisner B, Bittner L, Castella E, Danger M, Gauthier O, Karp-Boss L, Lombard F, Maps F, Stemmann L, Thiébaut E, Usseglio-Polatera P, Vogt M, Laviale M*, Ayata SD* (2021) Trait-based approaches : a common framework for freshwater and marine ecologists. Limnology & Oceanography. 66: 965-994. https://doi.org/10.1002/lno.11655 *co-last authors.

2019

  • 18. Lombard F et al. (2019). Globally consistent quantitative observations of planktonic ecosystems. Front. Mar. Sci. https://doi.org/10.3389/fmars.2019.00196
  • 17. Faure E, Not F , Benoiston AS, Labadie K, Bittner L*, Ayata SD* (2019). Mixotrophic protists display contrasted biogeographies in the global ocean. ISME Journal 13 : 1072-1083. *co-last authors.
  • 16. Benedetti F, Ayata SD, Irisson JO, Adloff F, Guilhaumon F (2019). Climate change may have minor impact on zooplankton functional diversity in the Mediterranean Sea. Diversity and Distributions 25 : 568-581. https://doi.org/10.1111/ddi.12857

2018

  • 15. Benedetti F, Vogt M, Righetti D, Guilhaumon F, Ayata SD (2018). Do functional groups of copepods differ in their ecological niches ? Journal of Biogeography 45 : 604-616.
  • 14. Ayata SD*, Irisson JO*, Aubert A, Berline L, Dutay JC, Mayot N, Nieblas AE, D’Ortenzio F, Palmiéri J, Reygondeau G, Rossi V, Guieu C (2018). Regionalisation of the Mediterranean basin, a MERMEX synthesis. Progress in Oceanography 163 : 7-20. *co-first authors.
  • 13. Benedetti F, Guilhaumon F, Adloff F, Ayata SD (2018) Investigating uncertainties in zooplankton composition shifts under climate change scenarios in the Mediterranean Sea. Ecography 41 : 345-360.

2017

  • 12. Chust G, Vogt M, Benedetti F, [...], , Benoiston AS, [...], Ayata SD (2017) Mare incognitum : A glimpse into the future plankton diversity and ecology. Frontiers in Marine Science 4 : 68.
  • 11. Reygondeau G, Guieu C, Irisson JO, Benedetti F, Ayata SD, Gasparini S, Koubbi P (2017) Biogeochemical regions of the Mediterranean Sea : an objective multidimensional and multivariate environmental approach. Progress in Oceanography 151 : 138-148.

2016

  • 10. Benedetti F, Gasparini S, Ayata SD (2016) Identifying copepod functional groups from species functional traits. Journal of Plankton Research 38(1) : 159 - 166.

2015

  • 9. Grimaud G, Le Guennec V, Ayata SD, Mairet F, Sciandra A, Bernard O (2015) Modelling the Effect of Temperature on Phytoplankton Growth across the Global Ocean. IFAC-PapersOnLine 48 (1) : 228-233.
  • 8. Crise A et al. (2015) A MSFD complementary approach for the assessment of pressures, knowledge and data gaps in Southern European Seas : The PERSEUS experience. Marine Pollution Bulletin 95 : 28-39.

2014

  • 7. Ayata SD, Lévy M, Aumont O, Resplandy L, Tagliabue A, Sciandra A, Bernard O (2014) Phytoplankton plasticity drives large variability in carbon fixation efficiency Geophysical Research Letters 41 : 1-7.

2013

  • 6. Ayata SD, Lévy M, Aumont O, Sciandra A, Sainte-Marie J, Tagliabue A, Bernard O (2013) Phytoplankton growth formulation in marine ecosystem models : should we take into account photo-acclimation and variable stoichiometry in oligotrophic areas ? Journal of Marine Systems 125 : 29-40.

2011

  • 5. Ayata SD, Stolba R, Comtet T, Thiébaut É. (2011) Meroplankton distribution and its relationship to coastal mesoscale hydrological structure in the northern Bay of Biscay (NE Atlantic). Journal of Plankton Research 33(8) : 1193-1211.

2010

  • 4. Ayata SD, Lazure P, Thiébaut É. (2010) How does the connectivity between populations mediate range limits of marine invertebrates ? A case study in the NE Atlantic. Progress in Oceanography 87 : 18-36.
  • 3. Lett C, Ayata SD, Huret M, Irisson JO. (2010) Biophysical modelling to investigate the effects of climate change on marine populations dispersal and connectivity. Progress in Oceanography 87 : 106-113.
  • 2. Rigal F, Comtet T, Ayata SD, Viard F. (2010) Does larval supply explain the low proliferation of the invasive gastropod Crepidula fornicata in a tidal estuary ? Biological Invasions 12 : 3171-3186.

2009

  • 1. Ayata SD, Ellien C, Dumas F, Dubois S, Thiébaut É (2009) Modelling larval dispersal and settlement of the reef-building polychaete Sabellaria alveolata : role of hydrodynamic processes on the sustainability of biogenic reefs. Continental Shelf Research 29 : 1605-1623.

Chapter of collective book

  • 1. Co-auteur du chapitre 4 du rapport régional d’évaluation de la biodiversité et les services écosystèmiques de l’IPBES (Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services) pour l’Europe et l’Asie Centrale (2018).

Data bases

  • 2. Benedetti F, Gasparini S, Ayata SD (2015) Mediterranean copepods’ functional traits. Dataset 854331 http: //dx.doi.org/10.1594/PANGAEA.854331
  • 1. Thiébaut E, Ayata SD (2008) LARVASUD cruise http://dx.doi.org/10.17600/8480050

General public publications

  • 12. Invited on the radio show La Terre au Carré on France Inter to talk about robots and big data to study plankton and climate change (25 Jan 2022)
  • 11. Invited on the radio show La Méthode Scientifique on France Culture to talk about plankton diversity (10 Jan 2022).
  • 10. Interview for the "Journal des Sciences" on France Culture. 13 Oct. 2021. https://www.franceculture. fr/emissions/le-journal-des-sciences/le-journal-des-sciences-du-mercredi-13-octobre-2021
  • 9. Ayata SD 2021. Weekly chronicles for the French-European radio Eu!radio. https://euradio.fr/category/ plongee-dans-les-oceans/
  • 8. Vilgrain L, Maps F, Irisson JO, Ayata SD. Comprendre l’écologie des copépodes grâce à la campagne Green Edge de 2016. Amundsen Science. 2 Fev 2021 (lien)
  • 7. Vilgrain L, Maps F, Irisson JO, Ayata SD. Green Edge : quand le printemps sonne le réveil du zooplancton. Ac- tualités à la Une du pôle ODATIS. 28 Janv 2021 www.odatis-ocean.fr/actualites/actualites-a-la-une/ green-edge-quand-le-printemps-sonne-le-reveil-du-zooplancton
  • 6. VilgrainL,MapsF,IrissonJO,AyataSD.Jeune, actif et coloré: le zooplancton s’anime lorsque la banquise arctique fond au printemps. Brève du journal de l’INSU. 19 Janv 2021 https://www.insu.cnrs.fr/fr/cnrsinfo/ jeune-actif-et-colore-le-zooplancton-sanime-lorsque-la-banquise-arctique-fond-au-printemps
  • 5. Ayata SD (2019) Ce que la couleur des océans révèle du changement climatique. The Conversation FR. 1 Avr 2019 https://theconversation.com/ce-que-la-couleur-des-oceans-revele-du-changement-climatique-113725
  • 4. Faure E, Bittner L, Ayata SD (2019) Le plancton mixotrophe, acteur méconnu de la photosynthèse. Communiqué de presse de Sorbonne Université. 11 Fev 2019 (lien SU). Communiqué de presse également diffusé par le CNRS le 11 Fev 2019 (lien CNRS) et le CEA le 14 Fev 2019 (lien CEA)
  • 3. Ayata SD (2017) Une synthèse des différentes écorégions de la mer Méditerranée. Brève du journal de l’INSU. 25 Oct 2017 http://www.insu.cnrs.fr/node/7624
  • 2. Ayata SD (2015) La variabilité de la séquestration du carbone dans les océans atténuée par la faculté d’adaptation du phytoplancton. Brève du journal de l’INSU. 27 Janv 2015 http://www.insu.cnrs.fr/en/node/5165
  • 1. Ayata SD (2013) Transport du "bébé plancton" le long des côtes françaises. Blog de mathématiciens français "Un jour, une brève" pour l’initiative internationnale "Mathématiques de la planète Terre 2013". Parution en ligne : 30 Janv 2013. http://mpt2013.fr/transport-du-bebe-plancton-le-long-des-cotes-francaises/