Génétique des Génomes Bactériens
Genetics of Bacterial Genomes
Coin Presse INSDC Policies History of Biology GenoList Journalist's Corner

Databases maintained by the Genetics of Bacterial Genomes unit

Bases de données maintenues par l'Unité de Génétique des Génomes Bactériens


When you use the databases please remember that the only way for us to provide continuous support is to show granting agencies that this work is used. Please quote the reference articles in your work.


  • Collaboration within the European Union-Japan program
      Bacillus subtilis 168

    Please quote: I. Moszer, L.M. Jones, S. Moreira, C. Fabry & A. Danchin
    SubtiList: the reference database for the Bacillus subtilis genome
    Nucleic Acids Research (2002) 30: 62-65

  • Collaboration with the University of Florida and Yale University
      Escherichia coli K12 (MG1655)
    Please quote: C Médigue, A Viari, A Hénaut, A Danchin
    Colibri: a functional data base for the Escherichia coli genome
    Microbiol Rev (1993) 57: 623-654

    C. Médigue, T. Rouxel, P. Vigier, A. Hénaut & A. Danchin
    Evidence for horizontal gene transfer in Escherichia coli speciation.
    J. Mol. Biol. (1991) 222: 851-856

  • Collaboration with the Unit of Genomics of Pathogenic Microorganisms
      Photorhabdus luminescens TT01

    Please quote: E. Duchaud, C. Rusniok, L. Frangeul, C. Buchrieser, A. Givaudan, S. Taourit, S. Bocs, C. Boursaux-Eude, M. Chandler, J-F. Charles, E. Dassa, R. Derose, S. Derzelle, G. Freyssinet, S. Gaudriault, C. Médigue, A. Lanois, K. Powell, P. Siguier , R. Vincent, V. Wingate, M. Zouine, P. Glaser, N. Boemare, A. Danchin & F. Kunst
    The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens.
    Nature Biotechnol. (2003) 21: 1307-1313

  • Collaboration with the HKU-Pasteur Research Centre and the BIOSUPPORT programme

    Please quote: G Fang, C Ho, YW Qiu, V Cubas, Z Yu, C Cabau, F Cheung, I Moszer, A Danchin
    Specialized microbial databases for inductive exploration of microbial genome sequences
    BMC Genomics (2005) 6: 14

    and the Shanghai Genome Centre (China)

        Leptospira interrogans
      LAI pdf
        S.X. Ren, G. Fu, X.G. Jiang, R. Zeng, Y.G. Miao, H. Xu, Y.X. Zhang, H. Xiong, G. Lu, L.F. Lu, H.Q. Jiang, J. Jia, Y.F. Tu, J.X. Jiang, W.Y. Gu, Y.Q. Zhang, Z. Cai, H.H. Sheng, H.F. Yin, Y. Zhang, G.F. Zhu, M. Wan, H.L. Huang, Z. Qian, S.Y. Wang, W. Ma, Z.J. Yao, Y. Shen, B.Q. Qiang, Q.C. Xia, X.K. Guo, A. Danchin, I. Saint Girons, R.L. Somerville, Y.M. Wen, M.H. Shi, Z. Chen, J.G. Xu & G.P. Zhao
      Unique physiological and pathogenic features of Leptospira interrogans revealed by whole-genome sequencing
      Nature (2003) 422: 888-893


        Staphylococcus epidermidis ATCC 12228 pdf
        Y.Q. Zhang, S.X. Ren, H.L. Li, Y.X. Wang, G. Fu, J. Yang, Z.Q. Qin, Y.G. Miao, W.Y. Wang, R.S. Chen, Y. Shen, Z. Chen, Z.H. Yuan, G.P. Zhao, D. Qu, A. Danchin & Y.M. Wen
      Genome-based analysis of virulence genes in a non-biofilm-forming Staphylococcus epidermidis strain (ATCC 12228).
      Mol Microbiol. (2003) 49:1577-1593

and the Beijing Genome Centre (China)

        Thermoanaerobacter tencongensis

and Fondaçao de Amparo a Pesquisa do Estado da Sao Paolo (Brasil)


        Xylella fastidiosa

and also, at the HKU-Pasteur Research Centre


        Bacillus anthracis


        Bacillus cereus


        Campylobacter jejuni


        Haemophilus influenzae


        Neisseria meningitidis


        Pseudomonas aeruginosa


        Pseudomonas putida


        Vibrio cholerae


        Vibrio vulnificus
        Pseudoalteromonas haloplanktis TAC125

and a small eucaryote, the Microsporidion


        Encephalitozoon cuniculi

and more to come...

    Bacillus subtilis (with Teraprot protein comparisons)


  • Collaboration with the University of Versailles Saint-Quentin

    Publication: P. Nitschké, P. Guerdoux-Jamet, H. Chiapello, G. Faroux, C. Hénaut, A. Hénaut & A. Danchin
    Indigo: a World-Wide-Web review of genomes and gene functions
    FEMS Microbiology Reviews. (1998) 22 : 207-227


        Bacillus subtilis 168
        Escherichia coli K12
        Arabidopsis thaliana

  • Home













    Bases de données