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Projects

I am implied in the development of several software projects.

PyPendentDrop

Open-source Python API (shipped with graphical and command line interfaces) to measure surface tension from images of pendent drops.

• Package on PyPI
• Documentation on ReadTheDocs
• Source code on GitHub

Limrendir

Limrendir is a free software that allows for viewing and saving video streams from Genicam compatible cameras using the Aravis library. It is a mashup between Aravis Viewer, which allows for user-friendly interactions with a camera including control and stream visualisation, and gevCapture, which allows for user-unfriendly recording of said stream.
It is coded in C using GTK3. The code is hosted on Github.

Tracktor

Tracktor is a statistical analysis software. It is able to compute many statistical metrics for large tracking datasets and compare the data to existing models. It renders the results in the form of publication-ready visuals.
It is coded in C++ using Qt5.

Tracktor is now mainly being developed by the talented Mathilde Bernard, Alexandre Deslys and Pablo Vargas.

Some publications featuring analysis made using Tracktor :

• Anna-Lena Neehus, Brenna Carey, Marija Landekic, Patricia Panikulam, Gail Deutsch, Masato Ogishi, Carlos A. Arango-Franco, Quentin Philippot et al.,
  Human inherited CCR2 deficiency underlies progressive polycystic lung disease,
  Cell, 187, 2, p390-408 (2024).
  DOI: 10.1016/j.cell.2023.11.036

• Tania Gajardo, Mathilde Bernard, Marie Lô, Elisa Turck, Claire Leveau, Marie-Thérèse El-Daher, Alexandre Deslys, Patricia Panikulam et al.,
  Actin dynamics regulation by TTC7A/PI4KIIIα limits DNA damage and cell death under confinement,
  Journal of Allergy and Clinical Immunology, 152, 4, p949-960 (2023).
  DOI: 10.1016/j.jaci.2023.06.016

• Sundary Sormendi, Mathieu Deygas, Anupam Sinha, Mathilde Bernard, Anja Krüger, Ioannis Kourtzelis, Grégoire Le Lay, Pablo J. Sáez et al.,
  HIF2α is a direct regulator of neutrophil motility,
  Blood, 137, 24 (2021).
  DOI: 10.1182/blood.2020007505

g2ltk

“G2L’s ToolKit”, a Python library I use daily to analyze experimental data.

Available on GitHub.

For a demonstration, see our Open access repository on Zenodo, DOI: 10.5281/zenodo.15167101