• Patterns of introgression in farmed mussels: A genomic study of Mytilus spp. in northern Scotland and Ireland
    Chapuis, Ambre F., Simon, Alexis, Arthur, Gregg, Fraslin, Clémence, Cariolato, Eleonora, Mirimin, Luca, Ellis, Robert P., Regan, Tim
    Aquaculture (2026)
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  • Population-scale Ancestral Recombination Graphs with tskit 1.0
    Jeffery, Ben, Wong, Yan, Thornton, Kevin, Tsambos, Georgia, Bisschop, Gertjan, Deng, Yun, Ellerman, E. Castedo, Forest, Thomas B., Fritze, Halley, Goldstein, Daniel, Gorjanc, Gregor, Gower, Graham, Gravel, Simon, Guez, Jeremy, Haller, Benjamin C., Kern, Andrew D., Kirk, Lloyd, Krukov, Ivan, Lee, Hanbin, Lehmann, Brieuc, Loay, Hossameldin, Osmond, Matthew M., Palmer, Duncan S., Pope, Nathaniel S., Ragsdale, Aaron P., Robertson, Duncan, Rodrigues, Murillo F., Kemenade, Hugo van, Clemens L. Weiß, Wohns, Anthony Wilder, Zhan, Shing H., Zhang, Brian C., Aspbury, Marianne, Baya, Nikolas A., Belsare, Saurabh, Biddanda, Arjun, Francisco Campuzano Jiménez, Gladstein, Ariella, Guo, Bing, Karthikeyan, Savita, Kretzschmar, Warren W., Rebollo, Inés, Saunack, Kumar, Shemirani, Ruhollah, Simon, Alexis, Smith, Chris, Sukumaran, Jeet, Terhorst, Jonathan, Unneberg, Per, Zhang, Ao, Ralph, Peter, Kelleher, Jerome
    Nature Methods (2026)
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  • Marine transmissible cancer navigates urbanized waters, threatening spillover
    Hammel, M., Touchard, F., Burioli, E. a. V., Paradis, L., Cerqueira, F., Chailler, E., Bernard, I., Cochet, H., Simon, A., Thomas, F., Destoumieux-Garzón, D., Charrière, G. M., Bierne, N.
    Proceedings of the Royal Society B: Biological Sciences (2024)
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  • The contribution of gene flow, selection, and genetic drift to five thousand years of human allele frequency change
    Simon, A., Coop, G.
    PNAS (2024)
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  • SNP discovery and genetic structure in blue mussel species using low coverage sequencing and a medium density 60 K SNP-array
    Nascimento-Schulze, J. C., Bean, T. P., Peñaloza, C., Paris, J. R., Whiting, J. R., Simon, A., Fraser, B. A., Houston, R. D., Bierne, N., Ellis, R. P.
    Evolutionary Applications (2023)
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  • Prevalence and polymorphism of a mussel transmissible cancer in Europe
    Hammel, M., Simon, A., Arbiol, C., Villalba, A., Burioli, E. A. V., Pépin, J.-F., Lamy, J.-B., Benabdelmouna, A., Bernard, I., Houssin, M., Charrière, G. M., Destoumieux-Garzon, D., Welch, J. J., Metzger, M. J., Bierne, N.
    Molecular Ecology (2022)
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  • Three new genome assemblies of blue mussel lineages: North and South European Mytilus edulis and Mediterranean Mytilus galloprovincialis
    Simon, A.
    bioRxiv (2022)
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  • Urban rendezvous along the seashore: Ports as Darwinian field labs for studying marine evolution in the Anthropocene
    Touchard, F.*, Simon, A.*, Bierne, N., Viard, F.
    Evolutionary Applications (2022)
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  • Agent-based modeling and genetics reveal the Limfjorden, Denmark, as a well-connected system for mussel larvae
    Pastor, A., Larsen, J., Hansen, F. T., Simon, A., Bierne, N., Maar, M.
    Marine Ecology Progress Series (2021)
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  • DILS: Demographic Inferences with Linked Selection by using ABC
    Fraisse, C., Popovic, I., Romiguier, J., Loire, E., Simon, A., Galtier, N., Duret, L., Bierne, N., Vekemans, X., Roux, C.
    Molecular Ecology Resources (2021)
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  • How do species barriers decay? Concordance and local introgression in mosaic hybrid zones of mussels
    Simon, A., Fraïsse, C., El Ayari, T., Liautard‐Haag, C., Strelkov, P., Welch, J. J., Bierne, N.
    Journal of Evolutionary Biology (2021)
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  • Replicated anthropogenic hybridisations reveal parallel patterns of admixture in marine mussels
    Simon, A., Arbiol, C., Nielsen, E. E., Couteau, J., Sussarellu, R., Burgeot, T., Bernard, I., Coolen, J. W. P., Lamy, J.-B., Robert, S., Skazina, M., Strelkov, P., Queiroga, H., Cancio, I., Welch, J. J., Viard, F., Bierne, N.
    Evolutionary Applications (2020)
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  • A single clonal lineage of transmissible cancer identified in two marine mussel species in South America and Europe
    Yonemitsu, M. A., Giersch, R. M., Polo-Prieto, M., Hammel, M., Simon, A., Cremonte, F., Avilés, F. T., Merino-Véliz, N., Burioli, E. A. V., Muttray, A. F., Sherry, J., Reinisch, C., Baldwin, S. A., Goff, S. P., Houssin, M., Arriagada, G., Vásquez, N., Bierne, N., Metzger, M. J.
    eLife (2019)
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  • Comparative population genomics confirms little population structure in two commercially targeted carcharhinid sharks
    Junge, C., Donnellan, S. C., Huveneers, C., Bradshaw, C. J. A., Simon, A., Drew, M., Duffy, C., Johnson, G., Cliff, G., Braccini, M., Cutmore, S. C., Butcher, P., McAuley, R., Peddemors, V., Rogers, P., Gillanders, B. M.
    Marine Biology (2019)
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  • Implementation of various approaches to study the prevalence, incidence and progression of disseminated neoplasia in mussel stocks
    Burioli, E. A. V., Trancart, S., Simon, A., Bernard, I., Charles, M., Oden, E., Bierne, N., Houssin, M.
    Journal of Invertebrate Pathology (2019)
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  • Coadapted genomes and selection on hybrids: Fisher's geometric model explains a variety of empirical patterns
    Simon, A., Bierne, N., Welch, J. J.
    Evolutionary Letters (2018)
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  • Digest: Demographic inferences accounting for selection at linked sites
    Simon, A.*, Duranton, M.*
    Evolution (2018)
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  • Weird genotypes? Don't discard them, transmissible cancer could be an explanation
    Riquet, F., Simon, A., Bierne, N.
    Evolutionary Applications (2017)
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