Expression profile of the Escherichia coli hns mutant

                   
0.01-0.02 0.02-0.04 0.04-0.08 0.08-0.16 0.16-0.32 0.32-0.64 0.64-1.28 1.28-2.56 2.56-5.12 5.12-10.24

      Expression level            


The annotation of "y" genes is regularly updated

 

Gene

(A)

Rapport d'expression BE1410/FB8ab P-Value SWISSPROT &TrEMBL
Numéro d'accession c
Fonction Localisation subcellulaired BE 1410 FB8
accD -1.61 7E-03 P08193 Acetyl-CoA carboxylase beta-carboxyltransferase subunit Cytoplasmic
 
aceB 2.21 2E-02 P08997 Malate synthase A Cytoplasmic    
allP 2.00 5E-02 P75712 Putative allantoin permease inner membrane  
alsE -1.23 3E-02 P32719 Allulose-6-P 3-epimerase inner membrane

ampD -1.52 3E-02 P13016 AmpC regulation Cytoplasmic

appA
2.50a
3E-2
P07102
Acid phosphatase pH 2.5
Periplasmic


appB
2.67
2E-2
P26458
Cytochrome bd II oxydase subunit II
Integral inner membrane


appY
2.74
4E-3
P05052
Regulatory protein
Cytoplasmic
 
aslB
5.70
2E-2
P25550
Putative arylsulfatase regulatory protein
Cytoplasmicd


basR -1.54 3E-02 P30843 BasR/ BasS two-component regulatory system homologous with OmpR-EnvZ family Cytoplasmic
 
caiT
-2.27
9E-3
P31553
Probable proton motive force driven uptake of carnitine and betaines 
Integral inner membrane 
 
cirA
0.43
4E-2
P17315
Colicin I receptor
Outer membrane
 
cpsB
2.70
5E-2
P24174
Mannose-1-phosphate guanylyltransferase
Cytoplasmicd
 
crcA 1.46 2E-02 P37001 High-copy crc-csp restores normal chromosome condensation in presence of camphor or mukB mutations outer membrane
 
creD 1.65 5E-02 P08369 Colicin E2 tolerance Integral inner membrane
 
csgA
2.83a
4E-2
P28307
Major curlin subunit 
Outer membrane
 
cspB
4.10
5E-2
P36995
Similar to cold shock protein
PS00352: Cold-shock DNA-binding domain signature
Cytoplasmic probable
 
cspC
4.73
1E-2
P36996
Similar to cold shock protein
PS00352: Cold-shock DNA-binding domain signature
Cytoplasmic probable

 
cspE
-3.03
1E-3
P36979
Similar to cold shock protein
PS00352: Cold-shock DNA-binding domain signature
Cytoplasmic probable


cspG
9.10
5E-2
Q47130
Similar to cold shock protein
PS00352: Cold-shock DNA-binding domain signature
Cytoplasmic probable

 
cspI
8.71
8E-3
P77605
Similar to cold shock protein
PS00352: Cold-shock DNA-binding domain signature
Cytoplasmic probable

 
cydA
2.45
5E-2
P11026
Cytochrome bd I oxydase subunit I
Integral inner membrane

 
cydB
9.26
5E-2
P11027
Cytochrome bd I oxydase subunit II
Integral inner membrane

 
cyoA
10.20
5E-2
P18400
Cytochrome O subunit II 
Integral inner membrane 

 
cysW -1.56 3E-02 P16702 Membrane-bound sulfate transport protein; may also transport Molybdate Integral inner membrane

dinG 1.43 5E-02 P27296 LexA regulated (SOS) repair enzyme Cytoplasmic
 
dksA -1.41 5E-02 P18274 High copy suppresses muk and TS growth and filamentation of dnaK mutant inner membrane  
dps
30.71b
3E-2
P27430
DNA protection during starvation protein
Cytoplasmic probable

 
elbA + 5E-04 P75987 Involved in isoprenoid biosynthesis Cytoplasmic    
evgA
7.35a
2E-2
P30854
Regulator of the two-component regulatory system EvgS/EvgA 
Cytoplasmic probable

 
fdhE -1.33 2E-02 P13024 Homologous to fdnC and fdnaB of Salmonella spp. Cytoplasmic    
feoB
4.26
5E-2
P33650
Ferrous iron transport protein B 
Integral inner membrane 
 
fimB
12.39
5E-3
P04742
Fimbriae recombinase
Cytoplasmic probable

 
fimI
6.61
2E-2
P39264
Fimbrin-like protein 
Outer membrane

 
flgA
-2.44
4E-2
P75933
Basal body P-ring formation protein 
Periplasmic probable 
 
flgE
-2.17
2E-2
P75937
Flagellar hook subunit protein
Cytoplasmicf
 
flgH
-2.86
5E-2
P75940
Basal body L-ring protein
Outer membrane
 
flgI -2.00 3E-2 P75941 Basal body P-ring protein
Periplasmic
   
flha -2.00 9E-3 P76298 Flagellar synthesis Integral inner membrane    
fliC
-12.5
9E-4
P04949
Flagellin
Extracellular

 
fliR -1.97 1E-3 P33135 Flagellar synthesis Integral inner membrane
 
folE -1.56 4E-02 P27511 GTP cyclohydrolase I Cytoplasmic  
ftn 3.54 8E-3 P23887 Iron storage protein Cytoplasmic  
gadA
56.00
4E-3
P80063
Glutamate decarboxylase alpha
Cytoplasmic probable
   
gadB
56.32
4E-3
P28302
Glutamate decarboxylase beta
Cytoplasmic probable
   
gadC 13.67 5E-3 P39183 Putative amino-acid antiporter Integral inner membrane probable
 
gatC 1.42 4E-02 P37189 Galactitol-specific enzyme IIC of PTS Integral inner membrane  
glf 2.53 1E-2 P37747 UDP-galactopyranose mutase Inner membrane f  
gltD
2.76
5E-2
P09832
Glutamate synthase beta subunit
Cytoplasmic
   
gltF
8.49
4E-3
P28721
Putative regulatory protein
Cytoplasmic
   
gmd
8.69
3E-2
P32054
GDP-mannose 4.6-dehydratase
Inner membraned

 
gmm
5.60
5E-2
P32056
Hydrolase
Cytoplasmicd
 
gnd
3.57
5E-3
P00350
6-phosphogluconate dehydrogenase
Inner membraned
 
groL 2.40 3E-2 P06139 Chaperone for assembly of enzyme complexes Cytoplasmic    
gspE
7.47
5E-2
P45759
Probable general secretion pathway protein E 
Cytoplasmic probable
 
gspG
16.97b
5E-2
P41442
Probable general secretion pathway protein G 
Periplasmicd

 
gspM 3.05 5E-2 P36678 Probable general secretion pathway protein M Inner membrane probable    
gspO 4.20 5E-2 P25960 Type 4 prepilin-like proteins leader peptide processing enzyme Integral inner membrane probable  
hdeA
48.40
4E-4
P26604
Putative chaperone-like protein involved in low pH resistance
Periplasmicd
   .FB8
hdeB
154.83
4E-4
P26605
Similar to hdeB (Shigella flexneri). involved in low pH resistance
Periplasmicd
   
hdeD
4.80
4E-3
P26603
Unknown function
Periplasmicd
   
hemG -1.49 2E-02 P27863 Protoporphyrinogen oxidase activity; neomycin sensitivity Cytoplasmic    
hha
20.75
7E-3
P23870
Haemolysin expression modulating protein
Cytoplasmicd
 
holA -1.45 2E-02 P28630 DNA polymerase III. delta-subunit Cytoplasmic    
htrL
5E-03 P25666 RfaH-regulated high-temperature gene Cytoplasmic
 
hyaF -1.34 2E-03 P19932 Nickel incorporation in hydrogenase 1 proteins Cytoplasmic
 
hypA -1.49 1E-02 P24189 Formate-hydrogenlyase system; guanine-nucleotide-binding protein. Ni donor for Hyd-3 large subunit Cytoplasmic
 
ilvM -1.69 5E-02 P13048 Acetohydroxy acid synthase II (AHAS-II); acetolactate synthase II Cytoplasmic  
infC -1.79 3E-02 P02999 Protein chain initiation factor 3. IF3 Cytoplasmic
 
ligA
7.62
5E-2
P15042
DNA ligase 
Cytoplasmicd

 
lit + 8E-04 P11072 Locus within defective prophage e14; expression of T4 late genes Cytoplasmic
 
livF -1.52 6E-03 P22731 Membrane protein (transport) membrane    
livH -1.41 2E-02 P08340 High-affinity branched-chain amino-acid transport system; membrane (transport) Integral inner membrane
 
livJ -1.69 1E-02 P02917 Binding protein. high-affinity branched-chain amino-acid transport (transport) Periplasmic    
lpd -1.3 2E-02 P00391 Lipoamide dehydrogenase (NADH) Cytoplasmic    
lpp -1.54 4E-02 P02937 Murein lipoprotein structural gene attached to outer membrane by a lipid anchor    
lpxD -1.47 4E-02 P21645 UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase Cytoplasmic
 
lrp
30.69b
5E-2
P19494
Leucine-responsive regulatory protein 
Cytoplasmic

 
minE -1.43 1E-02 P18198 Reverses inhibition by MinC of FtsZ ring Cytoplasmic
 
mreB -1.35 2E-02 P13519 Rod shape-determining protein MreB Cytoplasmic
 
msbB 1.47 5E-02 P24205 Role in outer membrane structure or function Integral inner membrane

murE -1.43 5E-02 P22188 Meso-Diaminopimelate adding enzyme Cytoplasmic
 
murG -4.54 4E-02 P17443 UDP-NAc-glucosamine: NAc-muramyl-(pentapeptide) pyrophosphoryl-undecaprenol NAc-glucosamine transferase Inner membane associated

nagE -1.47 2E-02 P09323 N-acetylglucosamine-specific enzyme II of phosphotransferase system Integral inner membrane
 
narJ -1.49 3E-02 P11351 Nitrate reductase delta-subunit; chaperone Cytoplasmic    
nrfA -1.22 4E-02 P32050 Formate-dependent nitrite reduction; tetraheme cytochrome c552 Periplasmic
 
nrfD -1.3 1E-02 P32709 Formate-dependent nitrite reduction; transmembrane protein similar to QOR Integral inner membrane    
nrfF -1.47 3E-02 P32711 Formate-dependent nitrite reduction; periplasmic protein; NrfA/B synthesis? Periplasmic  
nuoJ 1.4 5E-02 P33605 NADH dehydrogenase I subunit Integral membrane
 
ompC
3.24
1E-3
P06996
Porin
Integral outer membrane
 
ompF
-3.85
3E-3
P02931
Porin
Integral outer membrane
   
ompN
2.50
2E-2
P77747
Similar to Q56111. outer membrane protein S2 (Salmonella typhimurium). Belongs to the ompC/phoE family of porins
Integral outer membrane

 
ompX
3.58
5E-3
P36546
Similar to P16454. attachment invasion locus protein precursor (Yersinia enterocolitica). Belongs to the ail/ompx/pagc/lom family
PS00694&PS000695: Enterobacterial virulence outer membrane protein signatures 
Integral outer membrane
 
osmC
5.89
2E-3
P23929
Similar to osmotically inducible protein C (Deinococcus radiodurans)
Inner membraned

 
paaD 2.22 5E-02 P76080 Phenylacetic acid degradation Cytoplasmic
 
pflB
2.83
5E-2
P09373
Pyruvate formate-lyase 1
Cytoplasmicd

 
phnE -1.36 5E-02 P16683 Phosphonate transporter subunit. (cryptic in K-12) Integral inner membrane

phnI -1.31 8E-03 P16687 Carbon-phosphorus lyase complex subunit (phosphonate utilization cryptic in K-12) Cytoplasmic    
phnP -1.51 6E-03 P16692 Carbon-phosphorus lyase complex membrane-bound subunit (utilization cryptic in K-12) Cytoplasmic

phoP
2.72
1E-2
P23836
Regulator of the two-compotent system PhoP/PhoQ
Cytoplasmic
 
pinQ
2.69
7E-3
P77170
DNA invertase 
Cytoplasmicd
 
pinR
8.72
3E-3
P77574
DNA invertase 
Cytoplasmicd
 
polB -1.28 2E-02 P21189 DNA polymerase II Cytoplasmic
 
potD -1.49 1.E-02 P23861 Spermidine-binding membrane protein Periplasmic
 
prfC -1.43 1E-02 P33998 Release factor 3 Cytoplasmic    
proX
3.50
7E-3
P14177
Glycine-betaine binding protein
Periplasmic
   
psd -1.31 2E-02 P10740 Phosphatidylserine decarboxylase membrane associated
 
pstB -1.3 5E-02 P07655 High-affinity P-specific transport; cytoplasmic ATP-binding protein Inner membane associated

purM -1.35 5E-02 P08178 Phosphoribosylaminoimidazole synthetase Cytoplasmic    
rcsA
2.60
1E-3
P24210
Regulatory protein
Cytoplasmic

 
relF 1.74 3E-02 P07009 Function unknown; overproduction letal inner membrane

rfaI
5.25a
3E-2
P27128
Lipopolysaccharide 1.3-galactosyltransferase 
Periplasmicd

 
rfaJ
3.97a
2E-2
P27129
Lipopolysaccharide 1.2-glucosyltransferase 
Inner membraned

 
rfaK
4.52a
5E-2
P27242
Lipopolysaccharide 1.2-N-acetylglucosaminetransferase 
Peripheral membrane

 
rfaL 2.00 2E-2 P27243 Lipopolysaccharide core biosynthesis. O-antigen ligase Integral membrane
 
rfaS
3.50a
4E-2
P27126
Lipopolysaccharide core biosynthesis protein 
Inner membraned

 
rfaY 2.00 5E-2 P27240 Lipopolysaccharide core biosynthesis Cytoplasmicf  
rffC -1.45 4E-02 P27832 Synthesis of enterobacterial common antigen and chain elongation Cytoplasmic
 
rffM -1.33 6E-03 P27836 UDP-ManNAcA transferase Cytoplasmic
 
rhsA 1.85 5E-02 P16916 Encoded within repeats that are hotspots for chromosomal duplication formation; Function of protein is unknown Cytoplasmic
 
rhsD + 1E-03 P16919 Encoded within repeats that are hotspots for chromosomal duplication formation; Function of protein is unknown Cytoplasmic
 
rplA
-3.70
2E-2
P02384
50S ribosomal subunit protein L1
Cytoplasmic


rplB -2.22 3E-2 P02387 50S ribosomal subunit protein L2 Cytoplasmic
 
rplC -2.00 1E-2 P02386 50S ribosomal subunit protein L3 Cytoplasmic
 
rplF -2.00 1E-2 P02390 50S ribosomal subunit protein L6 Cytoplasmic
 
rplI
-3.33
5E-2
P02418
50S ribosomal subunit protein L9 
Cytoplasmic

 
rplK -2.22 4E-3 P02409 50S ribosomal subunit protein L11 Cytoplasmic
 
rplL -2.08 2E-3 P02392 50S ribosomal subunit protein L7/L12 Cytoplasmic    
rplN -4.00 5E-2 P02411 50S ribosomal subunit protein L14 Cytoplasmic  
rplO -2.00 4E-4 P02413 50S ribosomal subunit protein L15 Cytoplasmic    
rplQ -2.70 2E-2 P02416 50S ribosomal subunit protein L17 Cytoplasmic
 
rplW -2.77 2E-2 P02424 50S ribosomal subunit protein L23 Cytoplasmic  
rplX
-3.13
1E-2
P02425
50S ribosomal subunit protein L24
Cytoplasmic

 
rpmC -2.08 8E-3 P02429 50S ribosomal subunit protein L29 Cytoplasmic    
rpmF -2.00 6E-3 P02435 50S ribosomal subunit protein L32 Cytoplasmic    
rpmG -2.50 5E-2 P02436 50S ribosomal subunit protein L33 Cytoplasmic  
rpoS
3.75
5E-2
P13445
RNA polymerase sigma factor 38 
Cytoplasmicd

 
rpsH -2.04 5E-2 P02361 30S ribosomal subunit protein S8 Cytoplasmic  
rpsI -2.99 2E-2 P02363 30S ribosomal subunit protein S9 Cytoplasmic  
rpsM -2.00 2E-2 P02369 30S ribosomal subunit protein S13 Cytoplasmic
 
rpsN
-2.17
5E-2
P02370
30S ribosomal subunit protein S14
Cytoplasmic

 
rpsQ -2.50 4E-2 P02373 30S ribosomal subunit protein S17 Cytoplasmic

rpsS
-2.86
2E-2
P02375
30S ribosomal subunit protein S19
Cytoplasmic
   
sdhD -1.37 1E-02 P10445 Succinate dehydrogenase hydrophobic subunit Integral inner membrane  
secG -1.45 8E-03 P33582 P12 cytoplasmic membrane protein involved with protein export Integral inner membrane

selA -1.54 5E-02 P23328 With SelD. converts serine residue to selenocysteine on tRNA inner membrane
 
sgaU -1.33 1E-02 P39305 Putative hexulose-6-phosphate isomerase Cytoplasmic    
slp
22.96
4E-4
P37194
Lipoprotein
Attached to the outer membrane by a lipid anchor
 
smp -1.43 4E-02 P18838 Transcribed divergently from serB. overlapping promoter; membrane (ALS-II); valine insensitive; small subunit protein membrane associated    
spy
8.83
5E-2
P77754
Spheroplast protein Y 
Periplasmic

 
stpA
9.76
5E-2
P30017
DNA-binding protein
Cytoplasmic

 
tatA 2.00 2E-2 P27856 Translocation of periplasmic proteins. preservation of structures and ligands Integral membrane    
tatE
2.30
5E-2
P25895
Translocation of periplasmic proteins. preservation of structures and ligands 
Inner membraned
 
tdcE
2.75
4E-2
P42632
Pyruvate formate lyase or Ketobutyrate formate lyase
Cytoplasmic by similarity 
 
tktB -1.28 4E-02 P33570 Transketolase Cytoplasmic    
tufB -1.41 4E-02 P02990 Duplicate gene for EF-Tu subunit; elongation factor. unstable Cytoplasmic    
ugd
3.24
2E-2
P76373
UDP-glucose-6-dehydrogenase
Inner membraned

 
uhpC -1.51 3E-02 P09836 Membrane protein controlling UhpA activity. in concert with UhpB Cytoplasmic
 
wbbI 2.75 1E-2 P37749 Involved in lipopolysaccharide biosynthesis Cytoplasmic probable  
wbbJ
4.20a
5E-2
P37750
Putative lipopolysaccharide O-acetyl transferase 
Inner membraned

 
wbbK
2.15
2E-2
P37751
Lipopolysaccharide glycosyltransferase. transfer of UDP-galF and UDP-glucose 
Inner membrane-associated probable 
 
wcaA 2.00 5E-2 P77414 Involved in lipopolysaccharide biosynthesis Cytoplasmicf
 
wcaC
6.64
5E-2
P71237
Putative glycosyl transferase
Inner membraned

 
wcaE
8.70
5E-2
P71239
Putative glycosyl transferase 
Cytoplasmicd
 
wcaF
4.69
5E-2


 

wca
6.30
5E-2
P32057
Putative glycosyl transferase
Inner membraned
 
wcaJ
3.94
5E-2
P71241
UDP-glucose lipid carrier transferase
Inner membraned
 
wzb
6.62
5E-2
P77153
Probable low molecular weight protein-tyrosine-phosphatase 
Inner membraned


wzc
7.12
5E-2
P76387
Putative membrane-associated ATP-hydrolase
Inner membraned
   
xylH -1.26 4E-02 P37389 Xylose permease protein Integral inner membrane    
canB (yadF) -1.41 2E-02 P36857 Carbonic anhydrase B similar to counterpart in Dictyostelium discoideum Cytoplasmic
 
pilN (yadN)
23.12ab
5E-2
P37050
fimbrial adhesin similar to pilin mrkA precursor (Klebsiella pneumoniae
Outer membraned

 
yafJ -1.61 8E-03 Q47147 putative amidotransferase (Vibrio cholerae) Cytoplasmic
 
yafT 2.21 4E-02 P77339 putative aminopeptidase lipoprotein outer membrane  
yagK
24.78b
4E-2
P77657
CP4-6 prophage; protein of unknown function
Cytoplasmicd

 
yagL 1.31 8E-03 P77607 CP4-6 prophage; putative site-specific recombinase inner membrane

yagX
2.52
5E-2
P77802
Similar to P25733. CFA/I fimbrial subunit C precursor (Escherichia coli)
Outer membraned
 
yagY
8.34
5E-2
P77188
Similar to P77263. YagV hypothetical protein (Escherichia coli)
Periplasmicd
 
yagZ (ecpA)
1.73 2E-02 P77264 Common pilus-major subunit outer membrane  
yahK (adhA)
-1.37 4E-02 P75691 Promiscuous aldehyde reductase, Zn-dependent and NADP-binding Cytoplasmic

yaiP
22.70b
5E-2
P77760
Similar to Q54066. IcaA (Staphylococcus epidermidis)
Inner membraned

 
yaiS
25.37b
3E-2
P71311
Similar to P42981. YpjG hypothetical protein (Bacillus subtilis
Cytoplasmicd

 
yaiX 1.6 2E-02
Function unknown; interrupted by IS2A Cytoplasmic
 
yajD -1.78 4E-02 P19678 Function unknown Cytoplasmic
 
ybaJ (tomB)
4.14
3E-2
P37611
Modulator of Hha toxicity
Cytoplasmicd
   
ybbC 1.9 5E-04 P33668 Similar to P28911. YhhH hypothetical protein (Escherichia coli) outer or inner membrane

ybcC -1.47 2E-03
Exonuclease. insertion Cytoplasmic    
ybcL 3.41 5E-2 P77368 Similar to AE004189. hypothetical conserved protein (Vibrio cholerae) Outer membrane f

ybdA (entS)
-1.37 4E-02 P24077 Enterobactin exporter inner membrane  
ybdG -1.25 2E-02 P39455 Similar to AAF93440.1. conserved hypothetical protein (Vibrio cholerae) inner membrane    
ybdO 5.56 3E-02 P77746 Similar to P30979. YbeF. hypothetical transcriptional regulator (Escherichia coli) inner membrane
 
ybeZ -1.37 1E-02 P77349 Similar to VC0961. phoH family protein (Vibrio cholerae) Cytoplasmic
 
ybfD 1.6 2E-03 P28916 Similar to P28917. YdcC. H repeat-associated protein (Escherichia coli) inner membrane  
ybgE
36.64b
4E-2
P37343
PS00013: Membrane lipoprotein lipid attachment site signature
Inner membraned

 
ybjR -1.45 1E-02 P75820 Similar to AAG08870. conserved hypothetical protein (Pseudomonas aeruginosa) outer or inner membrane    
ycbQ
8.86
1E-3
P75855
Similar to P12903. fimbrial subunit type 1 precursor (Klebsiella pneumonia)
Outer membraned

 
ycbS 1.85 5E-02 P75857 Similar to AF129435. bovine colonization factor BcfC (Salmonella typhimurium) outer membrane
 
ycgV 1.6 5E-02 P76017 Similar to AJ133784 pertactin (Bordetella pertussis) inner membrane  
ycbW
3.00
2E-2
P75862
Unknown function
Inner membraned

 
yccA
5.71
3E-2
P06967
Similar to O25578. hypothetical membrane protein (Helicobacter pylori) PS01243: Uncharacterized protein family UPF005 signature
Integral membrane probable
   
ycdT
2.97
1E-3
P75908
Similar to P76236. YeaI hypothetical protein (Escherichia coli)
Integral membrane probable

 
ycgE
14.00
4E-2
P75989
Similar to P33358. YehV putative transcriptional regulator (Escherichia coli)  PS00552: Bacterial regulatory protein merR family signature
Cytoplasmicd

 
ycgH
2.50
2E-2
AE000215c
Similar to AE000248 putative ATP-binding component of a transport system and adhesin protein (Escherichia coli
Outer membraned
 
ycgX
3.02a
3E-2
P75988
Similar to P76156. YdfO hypothetical protein (Escherichia coli
Cytoplasmicd

 
yciF
2.31
4E-4
P21362
Unknown function
Cytoplasmicd
   
yciG
6.26
3E-3
P21361
Similar to P56614. YmdF hypothetical protein (Escherichia coli)
  PS00017: ATP-GTP binding site motif A
Cytoplasmicd
   
yciE 1.13 2E-02 P21363 Function unknown Cytoplasmic    
ydbA
17.62
8E-3
P33666
Unknown function
Cytoplasmicd
   
ydbD
2.93
5E-2
P25907
Unknown function
Periplasmicd
   
ydcD
5.03
1E-3
P31991
Unknown function
Inner membraned
 
yddA
10.06
5E-3
P31826
Similar to Q57335. Y036 hypothetical ABC transporter ATP-binding protein (Haemophilus influenzae
PS00211 & PS00017: ATP-GTP binding site motif A & ABC transporter family
Integral membrane probable
 
yddT
2.92
4E-3
P77790
Similar to vancomycin resistance protein VanX (Escherichia coli
Cytoplasmicd
 
ydeO
3.87
2E-2
P76135
Similar to P05052. AppY regulatory protein (Escherichia coli)
  PS00041: Bacterial regulartory proteins araC family signature
Cytoplasmic


ydeP
7.47
6E-3
P77561
Similar to P06131. formate dehydrogenase ? chain (Methanobacterium formicicum)
Cytoplasmicd
   
ydeT
43.47b
1E-2
AE000247c
Similar to P30130 outer membrane protein; export and assembly of type 1 fimbriae (Escherichia coli
Cytoplasmicd


ydfK + 4E-04 P76154 Similar to P76073. YnaE hypothetical protein (Escherichia coli) Cytoplasmic
 
ydfW -1.71 3E-02 P76164 Prophage Qin; Function unknown Cytoplasmic
 
ydfY + 3E-03 P77695 Similar to P52635. YccL hypothetical protein (Escherichia coli) Cytoplasmic  
ydgB 1.4 5E-02 P52109 Similar to AAG06825.1. probable short-chain dehydrogenase (Pseudomonas aeruginosa) Cytoplasmic
 
ydgF 2.11 4E-02 P77412 Similar to AAG04930.1. probable drug efflux transporter (Pseudomonas aeruginosa) inner membrane

ydgK (rsxP)
4.02 5E-2 P76180 Unknown function Inner membrane probable
 
ydiM 1.38 4E-02 P76197 Similar to Z99108. similar to multidrug resistance protein (Bacillus subtilis) inner membrane    
ydiO
32.70b
5E-2
P76200
Similar to P31571. probable carnitine operon oxidoreductase (Escherichia coli)
PS00072 & PS00073: Acyl-coA dehydrogenases signature 1&2
Cytoplasmicd

 
ydjH
4.60
4E-2
P77493
Similar to P44331. ribokinase RbsK homolog (Haemophilus influenzae)
PS00583 & PS00584: Carbohydrate kinase signature 1&2
Inner membraned

 
ydjN -1.33 5E-02 P77529 Similar to VC1235. sodium/dicarboxylate symporter (Vibrio cholerae) inner membrane

ydjQ -1.49 4E-02 P76213 Function unknown Cytoplasmic
 
yedS 1.99 3E-02 P76335 Similar to Q56110. outer membrane porin ompF1 precursor (Salmonella typhimurium) outer membrane  
yedV
6.17
1E-3
P76339
Similar to O44007. sensor protein CzcS (Ralstonia eutropha)
Integral inner membrane probable

 
yedW
35.36b
5E-2
P76340
Similar to O44006. regulatory protein CzcR (Ralstonia eutropha)
Cytoplasmic probable

 
yeeN 6.31 4E-4 P76351 Belongs to the UPF0082 family Cytoplasmicf  
yegR 13.33 5E-3 P76406 Unknown function Inner membranef
 
yegZ
4.08
2E-2
AE000298c
Similar to P10312 D protein GPD Bacteriophage P2 
Cytoplasmicd
   
yehA
6.32
5E-2
P33340
Unknown function
Cytoplasmic probable

 
yeiM 1.8 5E-02 P33024 Similar to VC2352. NupC family protein (Vibrio cholerae) inner membrane

yejO -1.78 5E-02 P33924 Similar to AJ006152 Pertactin (Bordetella pertussis) outer membrane  
yfcB -1.2 3E-02 P39199 Similar to AAF95263.1. adenine-specific methylase. putative (Vibrio cholerae) Cytoplasmic
 
yfcD -1.47 3E-02 P76494 Similar ytAL096811) putative NTP pyrophosphohydrolase (Streptomyces coelicolor) Cytoplasmic  
yfdH 2.34 3E-02 P77293 Similar to AL096811. putative NTP pyrophosphohydrolase (Streptomyces coelicolor) inner membrane

yfdW
8.08
1E-2
P77407
Similar to U82167 formyl-CoA transferase (Oxalobacter formigenes
Cytoplasmicd

 
yfiA
3.72
4E-2
P11285
Similar to U32711. sigma54 modulation protein. putative (Haemophilus influenzae
Cytoplasmicd
 
ygaP
6.22
5E-2
P55734
Similar to P73801 hypothetical protein (Synechocystis sp).
Inner membraned
 
ygbF
22.95b
2E-2
P45956
Unknown function
Cytoplasmicd
 
ygbT 2.29 3E-2 Q46896 Unknown function Cytoplasmicf  
ygcF
4.91
4E-2
P55139
Similar to D90908 hypothetical protein (Synechocystis sp.) 
Cytoplasmicd

 
ygcJ
4.04
5E-2
Q46899
Unknown function
Cytoplasmicd

 
ygcK
4.35
2E-2
P76632
Unknown function
Cytoplasmicd
   
ygcL
8.17
2E-2
Q46901
Unknown function
Inner or Outer membraned

 
ygfK -1.54 3E-02 Q46811 Putative oxidoreductase inner membrane
 
yhaV -1.51 1E-02 P42901 Function unknown Cytoplasmic
 
yhcE 2.07 5E-02 P45421 Function unknown; interrupted by IS5R outer membrane  
yhcS -1.59 2E-02 P45691 Putative transcriptional regulator LYSR-type Cytoplasmic    
yhhH 3.00 3E-02 P28911 Similar to P33668. YbbC hypothetical protein (Escherichia coli) Periplasmic  
yhhJ 1.48 5E-02 P31993 Similar to AAG08615.1. probable permease of ABC transporter (Pseudomonas aeruginosa) inner membrane    
yhhZ
2.56
5E-3
P46855
Similar to P80693 MajE. the major exported protein (Pseudomonas syringae)
Extracellular probable

 
yhiE 11.08 4E-4 P29688 Similar to P37195 YhiF hypothetical protein (Escherichia coli) Cytoplasmicf    
yhiF 12.46 3E-2 P37195 Similar to P29688 YhiE hypothetical protein (Escherichia coli) Inner membranef  
yhiM
17.51
4E-4
P37630
Unknown function
Inner membranef
 
yhiW
32.41b
2E-2
P37638
Similar to P05052. AppY protein (Escherichia coli)
PS00041: Bacterial regulatory proteins araC family signature
Cytoplasmicd

 
yhiX
13.92
4E-4
P37639
Similar to P10805. regulatory protein EnvY (Escherichia coli)
PS00041: Bacterial regulatory proteins araC family signature
Cytoplasmicd

 
yhjQ -1.54 3E-02 P37655 Function unknown Cytoplasmic  
yibJ 2.2 5E-02 P32109 Similar to RhsA Cytoplasmic  
yicO 1.15 5E-02 P31440 Similar to AAG08105.1. probable transporter (Pseudomonas aeruginosa) inner membrane

yjbB -1.16 1E-02 P32683 Similar to AAG08858.1. conserved hypothetical protein (Pseudomonas aeruginosa) Integral membrane    
yjdE
6.13
3E-2
P39269
Similar to P23891. probable cadaverine/lysine antiporter (Escherichia coli)
Integral inner membrane probable


yjhC 1.62 1E-02 P39353 Similar to AAG09709.1. unknown function (Pasteurella multocida) Cytoplasmic
 
yjhI
24.07b
4E-2
P39360
Similar to P76268. KdgR transcriptional regulator (Escherichia coli)
PS01051: Bacterial regulatory proteins. iclR family signature
Cytoplasmicd


ykgB
40.86b
4E-2
P75685
Similar to gbAAB18029. hypothetical protein (Haemophilus influenzae)
Integral inner membrane probable

 
ykgK + 5E-02 P71301 Similar to AF106566 RmbA (Salmonella typhimurium) Cytoplasmic
 
ylbH -1.75 2E-02
Similar to RhsE Cytoplasmic  
ymfD + 2E-03 P75967 Function unknown Cytoplasmic

ynaE
6.14
4E-4
P76073
Similar to P76154 YdfK hypothetical protein (Escherichia coli
Cytoplasmicd
 
yncI
15.30
9E-4
AE000243c
Similar to P28912 H repeat-associated protein (Escherichia coli
Inner membraned
 
ynjE (moaF)
-1.09 5E-02 P78067 Molybdopterin synthase sulfurtransferase specification protein Periplasmic
 
ypjB -1.45 5E-02 P76612 Function unknown Cytoplasmic  
yqfE 1.63 1E-02 P52038 Function unknown Cytoplasmic  
yqhC (aldR)
-1.47 4E-02 Q46855 AraC-type regulatory protein sensing aldehydes Cytoplasmic    
yqiH -1.47 3E-02 P77616 Probable molecular chaperone Periplasmic

zntA -1.25 5E-02 P37617 Zn2+ translocating P-type ATPase; hypersensitive to Zn and Cd salts Integral membrane

The results were obtained from at least 4 hybridizations performed from 4 different RNA extractions. Only genes with a P-value < 5 E-2 in a Wilcoxon statistical test are presented in the table.

The expression ratio between wild-type and hns mutant indicated by a in the 2d column were obtained from hybridizations performed with probes generated from 10 µg RNA.

Genes whose expression is below the background in one strain are indicated by d in the 3d column. Columns 4 and 5 correspond to the Acc. number and the protein function, respectively, in Swissprot (http://www.uniprot.org/),TREMBL ou Genebank databases.

The results of similarity searches performed with the BlastP program against non-redundant databases are presented in column 5. Protein cellular localization (column 6) was obtained either from Niceprot database or was predicted (f) by the PSORT program.


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