Génétique des Génomes Bactériens
Genetics of Bacterial Genomes
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Databases maintained by the Genetics of Bacterial Genomes unit

Bases de données maintenues par l'Unité de Génétique des Génomes Bactériens







 

When you use the databases please remember that the only way for us to provide continuous support is to show granting agencies that this work is used. Please quote the reference articles in your work.

 

  • Collaboration within the European Union-Japan program
      Bacillus subtilis 168
      SubtiList

    Please quote: I. Moszer, L.M. Jones, S. Moreira, C. Fabry & A. Danchin
    SubtiList: the reference database for the Bacillus subtilis genome
    Nucleic Acids Research (2002) 30: 62-65

  • Collaboration with the University of Florida and Yale University
      Escherichia coli K12 (MG1655)
      Colibri
    Please quote: C Médigue, A Viari, A Hénaut, A Danchin
    Colibri: a functional data base for the Escherichia coli genome
    Microbiol Rev (1993) 57: 623-654
     

    C. Médigue, T. Rouxel, P. Vigier, A. Hénaut & A. Danchin
    Evidence for horizontal gene transfer in Escherichia coli speciation.
    J. Mol. Biol. (1991) 222: 851-856
    pdf

  • Collaboration with the Unit of Genomics of Pathogenic Microorganisms
      Photorhabdus luminescens TT01
      PhotoList

    Please quote: E. Duchaud, C. Rusniok, L. Frangeul, C. Buchrieser, A. Givaudan, S. Taourit, S. Bocs, C. Boursaux-Eude, M. Chandler, J-F. Charles, E. Dassa, R. Derose, S. Derzelle, G. Freyssinet, S. Gaudriault, C. Médigue, A. Lanois, K. Powell, P. Siguier , R. Vincent, V. Wingate, M. Zouine, P. Glaser, N. Boemare, A. Danchin & F. Kunst
    The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens.
    Nature Biotechnol. (2003) 21: 1307-1313
    font>

  • Collaboration with the HKU-Pasteur Research Centre and the BIOSUPPORT programme

    Please quote: G Fang, C Ho, YW Qiu, V Cubas, Z Yu, C Cabau, F Cheung, I Moszer, A Danchin
    Specialized microbial databases for inductive exploration of microbial genome sequences
    BMC Genomics (2005) 6: 14

    and the Shanghai Genome Centre (China)

    •    
        Leptospira interrogans
      LAI pdf
        S.X. Ren, G. Fu, X.G. Jiang, R. Zeng, Y.G. Miao, H. Xu, Y.X. Zhang, H. Xiong, G. Lu, L.F. Lu, H.Q. Jiang, J. Jia, Y.F. Tu, J.X. Jiang, W.Y. Gu, Y.Q. Zhang, Z. Cai, H.H. Sheng, H.F. Yin, Y. Zhang, G.F. Zhu, M. Wan, H.L. Huang, Z. Qian, S.Y. Wang, W. Ma, Z.J. Yao, Y. Shen, B.Q. Qiang, Q.C. Xia, X.K. Guo, A. Danchin, I. Saint Girons, R.L. Somerville, Y.M. Wen, M.H. Shi, Z. Chen, J.G. Xu & G.P. Zhao
      Unique physiological and pathogenic features of Leptospira interrogans revealed by whole-genome sequencing
      Nature (2003) 422: 888-893

       

         
        Staphylococcus epidermidis ATCC 12228 pdf
        Y.Q. Zhang, S.X. Ren, H.L. Li, Y.X. Wang, G. Fu, J. Yang, Z.Q. Qin, Y.G. Miao, W.Y. Wang, R.S. Chen, Y. Shen, Z. Chen, Z.H. Yuan, G.P. Zhao, D. Qu, A. Danchin & Y.M. Wen
      Genome-based analysis of virulence genes in a non-biofilm-forming Staphylococcus epidermidis strain (ATCC 12228).
      Mol Microbiol. (2003) 49:1577-1593

and the Beijing Genome Centre (China)

         
        Thermoanaerobacter tencongensis
         

and Fondaçao de Amparo a Pesquisa do Estado da Sao Paolo (Brasil)

       

         
        Xylella fastidiosa
         

and also, at the HKU-Pasteur Research Centre

       

         
        Bacillus anthracis
         

       

         
        Bacillus cereus
         

       

         
        Campylobacter jejuni
         

       

         
        Haemophilus influenzae
         

       

         
        Neisseria meningitidis
         

       

         
        Pseudomonas aeruginosa
         

       

         
        Pseudomonas putida
         

       

         
        Vibrio cholerae
         

       

         
        Vibrio vulnificus
         
         
        Pseudoalteromonas haloplanktis TAC125
         
 

and a small eucaryote, the Microsporidion

       

         
        Encephalitozoon cuniculi
         

and more to come...

    Bacillus subtilis (with Teraprot protein comparisons)

     

  • Collaboration with the University of Versailles Saint-Quentin

    Publication: P. Nitschké, P. Guerdoux-Jamet, H. Chiapello, G. Faroux, C. Hénaut, A. Hénaut & A. Danchin
    Indigo: a World-Wide-Web review of genomes and gene functions
    FEMS Microbiology Reviews. (1998) 22 : 207-227

     

        Bacillus subtilis 168
        Escherichia coli K12
        Arabidopsis thaliana

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