• Rose, F., Michaluk M., Blindauer T., Ignatowska-Jankowska B., O’Shaughnessy L., Stephens G., Pereira T., Uusisaari M., Bozek K. (2024). Deep Imputation for Skeleton Data (DISK) in Behavioral Science. (bioRxiv – in review at Nature methods)
• Ibruli, O.* , Rose, F.* , Beleggia, F., Schmitt, A., Cartolano M., Torres Fernandez, L., Saggau, J., Bonasera, D., Kiljan, M., Gözüm, G., Lichius, L., Cai, J., Niu, L., Iannicelli Caiaffa, M., Herter, J., Walczak, H., Liccardi, G., Grüll, H., Büttner, R., Bosco, G., George, J., Thomas, R.K., Bozek, K., Reinhardt, H.C., & Herter-Sprie, G.S. A novel mouse model recapitulating the MMR-defective SCLC subtype uncovers an actionable sensitivity to immune checkpoint blockade. Accepted in Journal of Cancer Research and Clinical Oncology (2024)
• vom Stein, A.F., Rebollido-Rios, R., Lukas, A., Koch, M., von Lom, A., Reinartz, S., Bachurski, D., Rose, F., Bozek, K., Abdallah, A.T., Kohlhas, V., Saggau, J., Zölzer, R., Zhao, Y., Bruns, C., Bröckelmann, P.J., Lohneis, P., Büttner, R., Häupl, B., Oellerich, T., Nguyen, P. & Hallek, M. LYN kinase programs stromal fibroblasts to facilitate leukemic survival via regulation of c-JUN and THBS1. Nat Commun 14, 1330 (2023).
• Fompeyrine, D.A., Vorm, E.S., Ricka, N., Rose. F, & Pellegrin, G.. (2021). Enhancing human-machine teaming for medical prognosis through neural ordinary differential equations (NODEs). Hum.-Intell. Syst. Integr., p. 1-15
• Rose, F., Rappez, L., Triana, S. H., Stadler, M., Heikewalder, M., Alexandrov, T., & Auguste Genovesio. (2020) PySpacell : A Python package for spatial analysis of cell images. Cytometry Part A
• Rose, F.*, Basu, S.*, Rexhepaj, E., Chauchereau, A., Del Nery , E. & Genovesio, A. (2017) Compound Functional Prediction Using Multiple Unrelated Morphological Profiling Assays. SLAS TECHNOLOGY:Translating Life Sciences Innovation.
• Ph.D. thesis: Analysis of phenotypic and spatial cellular heterogeneity from large scale microscopy data. (2019) - In French
• Li, Y.*, Rose, F.*, di Pietro, F., Morin, X., & Genovesio, A. (2016). Detection and tracking of overlapping cell nuclei for large scale mitosis analyses. BMC Bioinformatics, 17(1).