Expression profile of the Escherichia coli
hns mutant
| 0.01-0.02 | 0.02-0.04 | 0.04-0.08 | 0.08-0.16 | 0.16-0.32 | 0.32-0.64 | 0.64-1.28 | 1.28-2.56 | 2.56-5.12 | 5.12-10.24 |
Expression level
| Gene
(A) |
Rapport d'expression BE1410/FB8ab | P-Value | SWISSPROT
&TrEMBL Numéro d'accession c |
Fonction | Localisation subcellulaired | BE 1410 | FB8 |
| accD | -1.61 | 7E-03 | P08193 | Acetyl-CoA carboxylase beta-carboxyltransferase subunit | Cytoplasmic | ||
| aceB | 2.21 | 2E-02 | P08997 | Malate synthase A | Cytoplasmic | ||
| allP | 2.00 | 5E-02 | P75712 | Putative allantoin permease | inner membrane | ||
| alsE | -1.23 | 3E-02 | P32719 | Allulose-6-P 3-epimerase | inner membrane | ||
| ampD | -1.52 | 3E-02 | P13016 | AmpC regulation | Cytoplasmic | ||
|
appA
|
2.50a
|
3E-2 |
Acid phosphatase pH 2.5
|
Periplasmic
|
|||
|
appB
|
2.67
|
2E-2 |
Cytochrome bd II oxydase subunit II
|
Integral inner membrane
|
|||
|
appY
|
2.74
|
4E-3 |
Regulatory protein
|
Cytoplasmic
|
|||
|
aslB
|
5.70
|
2E-2 |
Putative arylsulfatase regulatory protein
|
Cytoplasmicd
|
|||
| basR | -1.54 | 3E-02 | P30843 | BasR/ BasS two-component regulatory system homologous with OmpR-EnvZ family | Cytoplasmic | ||
|
caiT
|
-2.27
|
9E-3 |
Probable proton motive force driven uptake of
carnitine and betaines
|
Integral inner membrane
|
|||
|
cirA
|
0.43
|
4E-2 |
Colicin I receptor
|
Outer membrane
|
|||
|
cpsB
|
2.70
|
5E-2 |
Mannose-1-phosphate guanylyltransferase
|
Cytoplasmicd
|
|||
| crcA | 1.46 | 2E-02 | P37001 | High-copy crc-csp restores normal chromosome condensation in presence of camphor or mukB mutations | outer membrane | ||
| creD | 1.65 | 5E-02 | P08369 | Colicin E2 tolerance | Integral inner membrane | ||
|
csgA
|
2.83a
|
4E-2 |
Major curlin subunit
|
Outer membrane
|
|||
|
cspB
|
4.10
|
5E-2 |
Similar to cold shock protein
PS00352: Cold-shock DNA-binding domain signature |
Cytoplasmic probable
|
|||
|
cspC
|
4.73
|
1E-2 |
Similar to cold shock protein
PS00352: Cold-shock DNA-binding domain signature |
Cytoplasmic probable
|
|||
|
cspE
|
-3.03
|
1E-3 |
Similar to cold shock protein
PS00352: Cold-shock DNA-binding domain signature |
Cytoplasmic probable
|
|||
|
cspG
|
9.10
|
5E-2 |
Similar to cold shock protein
PS00352: Cold-shock DNA-binding domain signature |
Cytoplasmic probable
|
|||
|
cspI
|
8.71
|
8E-3 |
Similar to cold shock protein
PS00352: Cold-shock DNA-binding domain signature |
Cytoplasmic probable
|
|||
|
cydA
|
2.45
|
5E-2 |
Cytochrome bd I oxydase subunit I
|
Integral inner membrane
|
|||
|
cydB
|
9.26
|
5E-2 |
Cytochrome bd I oxydase subunit II
|
Integral inner membrane
|
|||
|
cyoA
|
10.20
|
5E-2 |
Cytochrome O subunit II
|
Integral inner membrane
|
|||
| cysW | -1.56 | 3E-02 | P16702 | Membrane-bound sulfate transport protein; may also transport Molybdate | Integral inner membrane | ||
| dinG | 1.43 | 5E-02 | P27296 | LexA regulated (SOS) repair enzyme | Cytoplasmic | ||
| dksA | -1.41 | 5E-02 | P18274 | High copy suppresses muk and TS growth and filamentation of dnaK mutant | inner membrane | ||
|
dps
|
30.71b
|
3E-2 |
DNA protection during starvation protein
|
Cytoplasmic probable
|
|||
| elbA | + | 5E-04 | P75987 | Involved in isoprenoid biosynthesis | Cytoplasmic | ||
|
evgA
|
7.35a
|
2E-2 |
Regulator of the two-component regulatory
system EvgS/EvgA
|
Cytoplasmic probable
|
|||
| fdhE | -1.33 | 2E-02 | P13024 | Homologous to fdnC and fdnaB of Salmonella spp. | Cytoplasmic | ||
|
feoB
|
4.26
|
5E-2 |
Ferrous iron transport protein B
|
Integral inner membrane
|
|||
|
fimB
|
12.39
|
5E-3 |
Fimbriae recombinase
|
Cytoplasmic probable
|
|||
|
fimI
|
6.61
|
2E-2 |
Fimbrin-like protein
|
Outer membrane
|
|||
|
flgA
|
-2.44
|
4E-2 |
Basal body P-ring formation protein
|
Periplasmic probable
|
|||
|
flgE
|
-2.17
|
2E-2 |
Flagellar hook subunit protein
|
Cytoplasmicf
|
|||
|
flgH
|
-2.86
|
5E-2 |
Basal body L-ring protein
|
Outer membrane
|
|||
| flgI | -2.00 | 3E-2 | P75941 | Basal body P-ring protein |
Periplasmic
|
||
| flha | -2.00 | 9E-3 | P76298 | Flagellar synthesis | Integral inner membrane | ||
|
fliC
|
-12.5
|
9E-4 |
Flagellin
|
Extracellular
|
|||
| fliR | -1.97 | 1E-3 | P33135 | Flagellar synthesis | Integral inner membrane | ||
| folE | -1.56 | 4E-02 | P27511 | GTP cyclohydrolase I | Cytoplasmic | ||
| ftn | 3.54 | 8E-3 | P23887 | Iron storage protein | Cytoplasmic | ||
|
gadA
|
56.00
|
4E-3 |
Glutamate decarboxylase alpha
|
Cytoplasmic probable
|
|||
|
gadB
|
56.32
|
4E-3 |
Glutamate decarboxylase beta
|
Cytoplasmic probable
|
|||
| gadC | 13.67 | 5E-3 | P39183 | Putative amino-acid antiporter | Integral inner membrane probable | ||
| gatC | 1.42 | 4E-02 | P37189 | Galactitol-specific enzyme IIC of PTS | Integral inner membrane | ||
| glf | 2.53 | 1E-2 | P37747 | UDP-galactopyranose mutase | Inner membrane f | ||
|
gltD
|
2.76
|
5E-2 |
Glutamate synthase beta subunit
|
Cytoplasmic
|
|||
|
gltF
|
8.49
|
4E-3 |
Putative regulatory protein
|
Cytoplasmic
|
|||
|
gmd
|
8.69
|
3E-2 |
GDP-mannose 4.6-dehydratase
|
Inner membraned
|
|||
|
gmm
|
5.60
|
5E-2 |
Hydrolase
|
Cytoplasmicd
|
|||
|
gnd
|
3.57
|
5E-3 |
6-phosphogluconate dehydrogenase
|
Inner membraned
|
|||
| groL | 2.40 | 3E-2 | P06139 | Chaperone for assembly of enzyme complexes | Cytoplasmic | ||
|
gspE
|
7.47
|
5E-2 |
Probable general secretion pathway protein E
|
Cytoplasmic probable
|
|||
|
gspG
|
16.97b
|
5E-2 |
Probable general secretion pathway protein G
|
Periplasmicd
|
|||
| gspM | 3.05 | 5E-2 | P36678 | Probable general secretion pathway protein M | Inner membrane probable | ||
| gspO | 4.20 | 5E-2 | P25960 | Type 4 prepilin-like proteins leader peptide processing enzyme | Integral inner membrane probable | ||
|
hdeA
|
48.40
|
4E-4 |
Putative chaperone-like protein involved in low
pH resistance
|
Periplasmicd
|
.FB8 | ||
|
hdeB
|
154.83
|
4E-4 |
Similar to hdeB (Shigella flexneri).
involved in low pH resistance
|
Periplasmicd
|
|||
|
hdeD
|
4.80
|
4E-3 |
Unknown function
|
Periplasmicd
|
|||
| hemG | -1.49 | 2E-02 | P27863 | Protoporphyrinogen oxidase activity; neomycin sensitivity | Cytoplasmic | ||
|
hha
|
20.75
|
7E-3 |
Haemolysin expression modulating protein
|
Cytoplasmicd
|
|||
| holA | -1.45 | 2E-02 | P28630 | DNA polymerase III. delta-subunit | Cytoplasmic | ||
| htrL | 5E-03 | P25666 | RfaH-regulated high-temperature gene | Cytoplasmic | |||
| hyaF | -1.34 | 2E-03 | P19932 | Nickel incorporation in hydrogenase 1 proteins | Cytoplasmic | ||
| hypA | -1.49 | 1E-02 | P24189 | Formate-hydrogenlyase system; guanine-nucleotide-binding protein. Ni donor for Hyd-3 large subunit | Cytoplasmic | ||
| ilvM | -1.69 | 5E-02 | P13048 | Acetohydroxy acid synthase II (AHAS-II); acetolactate synthase II | Cytoplasmic | ||
| infC | -1.79 | 3E-02 | P02999 | Protein chain initiation factor 3. IF3 | Cytoplasmic | ||
|
ligA
|
7.62
|
5E-2 |
DNA ligase
|
Cytoplasmicd
|
|||
| lit | + | 8E-04 | P11072 | Locus within defective prophage e14; expression of T4 late genes | Cytoplasmic | ||
| livF | -1.52 | 6E-03 | P22731 | Membrane protein (transport) | membrane | ||
| livH | -1.41 | 2E-02 | P08340 | High-affinity branched-chain amino-acid transport system; membrane (transport) | Integral inner membrane | ||
| livJ | -1.69 | 1E-02 | P02917 | Binding protein. high-affinity branched-chain amino-acid transport (transport) | Periplasmic | ||
| lpd | -1.3 | 2E-02 | P00391 | Lipoamide dehydrogenase (NADH) | Cytoplasmic | ||
| lpp | -1.54 | 4E-02 | P02937 | Murein lipoprotein structural gene | attached to outer membrane by a lipid anchor | ||
| lpxD | -1.47 | 4E-02 | P21645 | UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase | Cytoplasmic | ||
|
lrp
|
30.69b
|
5E-2 |
Leucine-responsive regulatory protein
|
Cytoplasmic
|
|||
| minE | -1.43 | 1E-02 | P18198 | Reverses inhibition by MinC of FtsZ ring | Cytoplasmic | ||
| mreB | -1.35 | 2E-02 | P13519 | Rod shape-determining protein MreB | Cytoplasmic | ||
| msbB | 1.47 | 5E-02 | P24205 | Role in outer membrane structure or function | Integral inner membrane | ||
| murE | -1.43 | 5E-02 | P22188 | Meso-Diaminopimelate adding enzyme | Cytoplasmic | ||
| murG | -4.54 | 4E-02 | P17443 | UDP-NAc-glucosamine: NAc-muramyl-(pentapeptide) pyrophosphoryl-undecaprenol NAc-glucosamine transferase | Inner membane associated | ||
| nagE | -1.47 | 2E-02 | P09323 | N-acetylglucosamine-specific enzyme II of phosphotransferase system | Integral inner membrane | ||
| narJ | -1.49 | 3E-02 | P11351 | Nitrate reductase delta-subunit; chaperone | Cytoplasmic | ||
| nrfA | -1.22 | 4E-02 | P32050 | Formate-dependent nitrite reduction; tetraheme cytochrome c552 | Periplasmic | ||
| nrfD | -1.3 | 1E-02 | P32709 | Formate-dependent nitrite reduction; transmembrane protein similar to QOR | Integral inner membrane | ||
| nrfF | -1.47 | 3E-02 | P32711 | Formate-dependent nitrite reduction; periplasmic protein; NrfA/B synthesis? | Periplasmic | ||
| nuoJ | 1.4 | 5E-02 | P33605 | NADH dehydrogenase I subunit | Integral membrane | ||
|
ompC
|
3.24
|
1E-3 |
Porin
|
Integral outer membrane
|
|||
|
ompF
|
-3.85
|
3E-3 |
Porin
|
Integral outer membrane
|
|||
|
ompN
|
2.50
|
2E-2 |
Similar to Q56111. outer membrane protein S2 (Salmonella
typhimurium). Belongs to the ompC/phoE family of porins
|
Integral outer membrane
|
|||
|
ompX
|
3.58
|
5E-3 |
Similar to P16454. attachment invasion locus
protein precursor (Yersinia enterocolitica). Belongs to the
ail/ompx/pagc/lom family
PS00694&PS000695: Enterobacterial virulence outer membrane protein signatures |
Integral outer membrane
|
|||
|
osmC
|
5.89
|
2E-3 |
Similar to osmotically inducible protein C (Deinococcus
radiodurans)
|
Inner membraned
|
|||
| paaD | 2.22 | 5E-02 | P76080 | Phenylacetic acid degradation | Cytoplasmic | ||
|
pflB
|
2.83
|
5E-2 |
Pyruvate formate-lyase 1
|
Cytoplasmicd
|
|||
| phnE | -1.36 | 5E-02 | P16683 | Phosphonate transporter subunit. (cryptic in K-12) | Integral inner membrane | ||
| phnI | -1.31 | 8E-03 | P16687 | Carbon-phosphorus lyase complex subunit (phosphonate utilization cryptic in K-12) | Cytoplasmic | ||
| phnP | -1.51 | 6E-03 | P16692 | Carbon-phosphorus lyase complex membrane-bound subunit (utilization cryptic in K-12) | Cytoplasmic | ||
|
phoP
|
2.72
|
1E-2 |
Regulator of the two-compotent system PhoP/PhoQ
|
Cytoplasmic
|
|||
|
pinQ
|
2.69
|
7E-3 |
DNA invertase
|
Cytoplasmicd
|
|||
|
pinR
|
8.72
|
3E-3 |
DNA invertase
|
Cytoplasmicd
|
|||
| polB | -1.28 | 2E-02 | P21189 | DNA polymerase II | Cytoplasmic | ||
| potD | -1.49 | 1.E-02 | P23861 | Spermidine-binding membrane protein | Periplasmic | ||
| prfC | -1.43 | 1E-02 | P33998 | Release factor 3 | Cytoplasmic | ||
|
proX
|
3.50
|
7E-3 |
Glycine-betaine binding protein
|
Periplasmic
|
|||
| psd | -1.31 | 2E-02 | P10740 | Phosphatidylserine decarboxylase | membrane associated | ||
| pstB | -1.3 | 5E-02 | P07655 | High-affinity P-specific transport; cytoplasmic ATP-binding protein | Inner membane associated | ||
| purM | -1.35 | 5E-02 | P08178 | Phosphoribosylaminoimidazole synthetase | Cytoplasmic | ||
|
rcsA
|
2.60
|
1E-3 |
Regulatory protein
|
Cytoplasmic
|
|||
| relF | 1.74 | 3E-02 | P07009 | Function unknown; overproduction lethal | inner membrane | ||
|
rfaI
|
5.25a
|
3E-2 |
Lipopolysaccharide 1.3-galactosyltransferase
|
Periplasmicd
|
|||
|
rfaJ
|
3.97a
|
2E-2 |
Lipopolysaccharide 1.2-glucosyltransferase
|
Inner membraned
|
|||
|
rfaK
|
4.52a
|
5E-2 |
Lipopolysaccharide
1.2-N-acetylglucosaminetransferase
|
Peripheral membrane
|
|||
| rfaL | 2.00 | 2E-2 | P27243 | Lipopolysaccharide core biosynthesis. O-antigen ligase | Integral membrane | ||
|
rfaS
|
3.50a
|
4E-2 |
Lipopolysaccharide core biosynthesis protein
|
Inner membraned
|
|||
| rfaY | 2.00 | 5E-2 | P27240 | Lipopolysaccharide core biosynthesis | Cytoplasmicf | ||
| rffC | -1.45 | 4E-02 | P27832 | Synthesis of enterobacterial common antigen and chain elongation | Cytoplasmic | ||
| rffM | -1.33 | 6E-03 | P27836 | UDP-ManNAcA transferase | Cytoplasmic | ||
| rhsA | 1.85 | 5E-02 | P16916 | Encoded within repeats that are hotspots for chromosomal duplication formation; Function of protein is unknown | Cytoplasmic | ||
| rhsD | + | 1E-03 | P16919 | Encoded within repeats that are hotspots for chromosomal duplication formation; Function of protein is unknown | Cytoplasmic | ||
|
rplA
|
-3.70
|
2E-2 |
50S ribosomal subunit protein L1
|
Cytoplasmic
|
|||
| rplB | -2.22 | 3E-2 | P02387 | 50S ribosomal subunit protein L2 | Cytoplasmic | ||
| rplC | -2.00 | 1E-2 | P02386 | 50S ribosomal subunit protein L3 | Cytoplasmic | ||
| rplF | -2.00 | 1E-2 | P02390 | 50S ribosomal subunit protein L6 | Cytoplasmic | ||
|
rplI
|
-3.33
|
5E-2 |
50S ribosomal subunit protein L9
|
Cytoplasmic
|
|||
| rplK | -2.22 | 4E-3 | P02409 | 50S ribosomal subunit protein L11 | Cytoplasmic | ||
| rplL | -2.08 | 2E-3 | P02392 | 50S ribosomal subunit protein L7/L12 | Cytoplasmic | ||
| rplN | -4.00 | 5E-2 | P02411 | 50S ribosomal subunit protein L14 | Cytoplasmic | ||
| rplO | -2.00 | 4E-4 | P02413 | 50S ribosomal subunit protein L15 | Cytoplasmic | ||
| rplQ | -2.70 | 2E-2 | P02416 | 50S ribosomal subunit protein L17 | Cytoplasmic | ||
| rplW | -2.77 | 2E-2 | P02424 | 50S ribosomal subunit protein L23 | Cytoplasmic | ||
|
rplX
|
-3.13
|
1E-2 |
50S ribosomal subunit protein L24
|
Cytoplasmic
|
|||
| rpmC | -2.08 | 8E-3 | P02429 | 50S ribosomal subunit protein L29 | Cytoplasmic | ||
| rpmF | -2.00 | 6E-3 | P02435 | 50S ribosomal subunit protein L32 | Cytoplasmic | ||
| rpmG | -2.50 | 5E-2 | P02436 | 50S ribosomal subunit protein L33 | Cytoplasmic | ||
|
rpoS
|
3.75
|
5E-2 |
RNA polymerase sigma factor 38
|
Cytoplasmicd
|
|||
| rpsH | -2.04 | 5E-2 | P02361 | 30S ribosomal subunit protein S8 | Cytoplasmic | ||
| rpsI | -2.99 | 2E-2 | P02363 | 30S ribosomal subunit protein S9 | Cytoplasmic | ||
| rpsM | -2.00 | 2E-2 | P02369 | 30S ribosomal subunit protein S13 | Cytoplasmic | ||
|
rpsN
|
-2.17
|
5E-2 |
30S ribosomal subunit protein S14
|
Cytoplasmic
|
|||
| rpsQ | -2.50 | 4E-2 | P02373 | 30S ribosomal subunit protein S17 | Cytoplasmic | ||
|
rpsS
|
-2.86
|
2E-2 |
30S ribosomal subunit protein S19
|
Cytoplasmic
|
|||
| sdhD | -1.37 | 1E-02 | P10445 | Succinate dehydrogenase hydrophobic subunit | Integral inner membrane | ||
| secG | -1.45 | 8E-03 | P33582 | P12 cytoplasmic membrane protein involved with protein export | Integral inner membrane | ||
| selA | -1.54 | 5E-02 | P23328 | With SelD. converts serine residue to selenocysteine on tRNA | inner membrane | ||
| sgaU | -1.33 | 1E-02 | P39305 | Putative hexulose-6-phosphate isomerase | Cytoplasmic | ||
|
slp
|
22.96
|
4E-4 |
Lipoprotein
|
Attached to the outer membrane by a lipid
anchor
|
|||
| smp | -1.43 | 4E-02 | P18838 | Transcribed divergently from serB. overlapping promoter; membrane (ALS-II); valine insensitive; small subunit protein | membrane associated | ||
|
spy
|
8.83
|
5E-2 |
Spheroplast protein Y
|
Periplasmic
|
|||
|
stpA
|
9.76
|
5E-2 |
DNA-binding protein
|
Cytoplasmic
|
|||
| tatA | 2.00 | 2E-2 | P27856 | Translocation of periplasmic proteins. preservation of structures and ligands | Integral membrane | ||
|
tatE
|
2.30
|
5E-2 |
Translocation of periplasmic proteins.
preservation of structures and ligands
|
Inner membraned
|
|||
|
tdcE
|
2.75
|
4E-2 |
Pyruvate formate lyase or Ketobutyrate formate
lyase
|
Cytoplasmic by similarity
|
|||
| tktB | -1.28 | 4E-02 | P33570 | Transketolase | Cytoplasmic | ||
| tufB | -1.41 | 4E-02 | P02990 | Duplicate gene for EF-Tu subunit; elongation factor. unstable | Cytoplasmic | ||
|
ugd
|
3.24
|
2E-2 |
UDP-glucose-6-dehydrogenase
|
Inner membraned
|
|||
| uhpC | -1.51 | 3E-02 | P09836 | Membrane protein controlling UhpA activity. in concert with UhpB | Cytoplasmic | ||
| wbbI | 2.75 | 1E-2 | P37749 | Involved in lipopolysaccharide biosynthesis | Cytoplasmic probable | ||
|
wbbJ
|
4.20a
|
5E-2 |
Putative lipopolysaccharide O-acetyl
transferase
|
Inner membraned
|
|||
|
wbbK
|
2.15
|
2E-2 |
Lipopolysaccharide glycosyltransferase. transfer
of UDP-galF and UDP-glucose
|
Inner membrane-associated probable
|
|||
| wcaA | 2.00 | 5E-2 | P77414 | Involved in lipopolysaccharide biosynthesis | Cytoplasmicf | ||
|
wcaC
|
6.64
|
5E-2 |
Putative glycosyl transferase
|
Inner membraned
|
|||
|
wcaE
|
8.70
|
5E-2 |
Putative glycosyl transferase
|
Cytoplasmicd
|
|||
|
wcaF
|
4.69
|
5E-2 |
|
||||
|
wca
|
6.30
|
5E-2 |
Putative glycosyl transferase
|
Inner membraned
|
|||
|
wcaJ
|
3.94
|
5E-2 |
UDP-glucose lipid carrier transferase
|
Inner membraned
|
|||
|
wzb
|
6.62
|
5E-2 |
Probable low molecular weight
protein-tyrosine-phosphatase
|
Inner membraned
|
|||
|
wzc
|
7.12
|
5E-2 |
Putative membrane-associated ATP-hydrolase
|
Inner membraned
|
|||
| xylH | -1.26 | 4E-02 | P37389 | Xylose permease protein | Integral inner membrane | ||
| yadF | -1.41 | 2E-02 | P36857 | Similar to U66368 a carbonic anhydrase (Dictyostelium discoideum) | Cytoplasmic | ||
|
yadN
|
23.12ab
|
5E-2 |
Similar to P12267. type 3 fimbrial protein mrkA
precursor (Klebsiella pneumoniae)
|
Outer membraned
|
|||
| yafJ | -1.61 | 8E-03 | Q47147 | Similar to VC2229. conserved hypothetical protein (Vibrio cholerae) | Cytoplasmic | ||
| yafT | 2.21 | 4E-02 | P77339 | Function unknown | outer membrane | ||
|
yagK
|
24.78b
|
4E-2 |
Similar to P52125. YfjJ hypothetical protein (Escherichia
coli)
|
Cytoplasmicd
|
|||
| yagL | 1.31 | 8E-03 | P77607 | Similar to AAF96693.1. resolvase putative (Vibrio cholerae) | inner membrane | ||
|
yagX
|
2.52
|
5E-2 |
Similar to P25733. CFA/I fimbrial subunit C
precursor (Escherichia coli)
|
Outer membraned
|
|||
|
yagY
|
8.34
|
5E-2 |
Similar to P77263. YagV hypothetical protein (Escherichia
coli)
|
Periplasmicd
|
|||
| yagZ | 1.73 | 2E-02 | P77264 | Function unknown | outer membrane | ||
| yahK | -1.37 | 4E-02 | P75691 | Similar to XF1746. valcohol dehydrogenase (Xylella fastidiosa) | Cytoplasmic | ||
|
yaiP
|
22.70b
|
5E-2 |
Similar to Q54066. IcaA (Staphylococcus
epidermidis)
|
Inner membraned
|
|||
|
yaiS
|
25.37b
|
3E-2 |
Similar to P42981. YpjG hypothetical protein (Bacillus
subtilis)
|
Cytoplasmicd
|
|||
| yaiX | 1.6 | 2E-02 | Function unknown; interrupted by IS2A | Cytoplasmic | |||
| yajD | -1.78 | 4E-02 | P19678 | Function unknown | Cytoplasmic | ||
|
ybaJ
|
4.14
|
3E-2 |
Unknown function
|
Cytoplasmicd
|
|||
| ybbC | 1.9 | 5E-04 | P33668 | Similar to P28911. YhhH hypothetical protein (Escherichia coli) | outer or inner membrane | ||
| ybcC | -1.47 | 2E-03 | Exonuclease. insertion | Cytoplasmic | |||
| ybcL | 3.41 | 5E-2 | P77368 | Similar to AE004189. hypothetical conserved protein (Vibrio cholerae) | Outer membrane f | ||
| ybdA | -1.37 | 4E-02 | P24077 | Function unknown | inner membrane | ||
| ybdG | -1.25 | 2E-02 | P39455 | Similar to AAF93440.1. conserved hypothetical protein (Vibrio cholerae) | inner membrane | ||
| ybdO | 5.56 | 3E-02 | P77746 | Similar to P30979. YbeF. hypothetical transcriptional regulator (Escherichia coli) | inner membrane | ||
| ybeZ | -1.37 | 1E-02 | P77349 | Similar to VC0961. phoH family protein (Vibrio cholerae) | Cytoplasmic | ||
| ybfD | 1.6 | 2E-03 | P28916 | Similar to P28917. YdcC. H repeat-associated protein (Escherichia coli) | inner membrane | ||
|
ybgE
|
36.64b
|
4E-2 |
PS00013: Membrane lipoprotein lipid attachment
site signature
|
Inner membraned
|
|||
| ybjR | -1.45 | 1E-02 | P75820 | Similar to AAG08870. conserved hypothetical protein (Pseudomonas aeruginosa) | outer or inner membrane | ||
|
ycbQ
|
8.86
|
1E-3 |
Similar to P12903. fimbrial subunit type 1
precursor (Klebsiella pneumonia)
|
Outer membraned
|
|||
| ycbS | 1.85 | 5E-02 | P75857 | Similar to AF129435. bovine colonization factor BcfC (Salmonella typhimurium) | outer membrane | ||
| ycgV | 1.6 | 5E-02 | P76017 | Similar to AJ133784 pertactin (Bordetella pertussis) | inner membrane | ||
|
ycbW
|
3.00
|
2E-2 |
Unknown function
|
Inner membraned
|
|||
|
yccA
|
5.71
|
3E-2 |
Similar to O25578. hypothetical membrane
protein (Helicobacter pylori) PS01243: Uncharacterized
protein family UPF005 signature
|
Integral membrane probable
|
|||
|
ycdT
|
2.97
|
1E-3 |
Similar to P76236. YeaI hypothetical protein (Escherichia
coli)
|
Integral membrane probable
|
|||
|
ycgE
|
14.00
|
4E-2 |
Similar to P33358. YehV putative transcriptional
regulator (Escherichia coli) PS00552: Bacterial regulatory
protein merR family signature
|
Cytoplasmicd
|
|||
|
ycgH
|
2.50
|
2E-2 |
AE000215c
|
Similar to AE000248 putative ATP-binding
component of a transport system and adhesin protein (Escherichia
coli)
|
Outer membraned
|
||
|
ycgX
|
3.02a
|
3E-2 |
Similar to P76156. YdfO hypothetical
protein (Escherichia coli)
|
Cytoplasmicd
|
|||
|
yciF
|
2.31
|
4E-4 |
Unknown function
|
Cytoplasmicd
|
|||
|
yciG
|
6.26
|
3E-3 |
Similar to P56614. YmdF hypothetical protein (Escherichia
coli)
PS00017: ATP-GTP binding site motif A |
Cytoplasmicd
|
|||
| yciE | 1.13 | 2E-02 | P21363 | Function unknown | Cytoplasmic | ||
|
ydbA
|
17.62
|
8E-3 |
Unknown function
|
Cytoplasmicd
|
|||
|
ydbD
|
2.93
|
5E-2 |
Unknown function
|
Periplasmicd
|
|||
|
ydcD
|
5.03
|
1E-3 |
Unknown function
|
Inner membraned
|
|||
|
yddA
|
10.06
|
5E-3 |
Similar to Q57335. Y036 hypothetical ABC
transporter ATP-binding protein (Haemophilus influenzae)
PS00211 & PS00017: ATP-GTP binding site motif A & ABC transporter family |
Integral membrane probable
|
|||
|
yddT
|
2.92
|
4E-3 |
Similar to vancomycin resistance protein VanX (Escherichia
coli)
|
Cytoplasmicd
|
|||
|
ydeO
|
3.87
|
2E-2 |
Similar to P05052. AppY regulatory protein (Escherichia
coli)
PS00041: Bacterial regulartory proteins araC family signature |
Cytoplasmic
|
|||
|
ydeP
|
7.47
|
6E-3 |
Similar to P06131. formate dehydrogenase ?
chain (Methanobacterium formicicum)
|
Cytoplasmicd
|
|||
|
ydeT
|
43.47b
|
1E-2 |
AE000247c
|
Similar to P30130 outer membrane protein;
export and assembly of type 1 fimbriae (Escherichia coli)
|
Cytoplasmicd
|
||
| ydfK | + | 4E-04 | P76154 | Similar to P76073. YnaE hypothetical protein (Escherichia coli) | Cytoplasmic | ||
| ydfW | -1.71 | 3E-02 | P76164 | Function unknown | Cytoplasmic | ||
| ydfY | + | 3E-03 | P77695 | Similar to P52635. YccL hypothetical protein (Escherichia coli) | Cytoplasmic | ||
| ydgB | 1.4 | 5E-02 | P52109 | Similar to AAG06825.1. probable short-chain dehydrogenase (Pseudomonas aeruginosa) | Cytoplasmic | ||
| ydgF | 2.11 | 4E-02 | P77412 | Similar to AAG04930.1. probable drug efflux transporter (Pseudomonas aeruginosa) | inner membrane | ||
| ydgK | 4.02 | 5E-2 | P76180 | Unknown function | Inner membrane probable | ||
| ydiM | 1.38 | 4E-02 | P76197 | Similar to Z99108. similar to multidrug resistance protein (Bacillus subtilis) | inner membrane | ||
|
ydiO
|
32.70b
|
5E-2 |
Similar to P31571. probable carnitine operon
oxidoreductase (Escherichia coli)
PS00072 & PS00073: Acyl-coA dehydrogenases signature 1&2 |
Cytoplasmicd
|
|||
|
ydjH
|
4.60
|
4E-2 |
Similar to P44331. ribokinase RbsK homolog (Haemophilus
influenzae)
PS00583 & PS00584: Carbohydrate kinase signature 1&2 |
Inner membraned
|
|||
| ydjN | -1.33 | 5E-02 | P77529 | Similar to VC1235. sodium/dicarboxylate symporter (Vibrio cholerae) | inner membrane | ||
| ydjQ | -1.49 | 4E-02 | P76213 | Function unknown | Cytoplasmic | ||
| yedS | 1.99 | 3E-02 | P76335 | Similar to Q56110. outer membrane porin ompF1 precursor (Salmonella typhimurium) | outer membrane | ||
|
yedV
|
6.17
|
1E-3 |
Similar to O44007. sensor protein CzcS (Ralstonia
eutropha)
|
Integral inner membrane probable
|
|||
|
yedW
|
35.36b
|
5E-2 |
Similar to O44006. regulatory protein CzcR (Ralstonia
eutropha)
|
Cytoplasmic probable
|
|||
| yeeN | 6.31 | 4E-4 | P76351 | Belongs to the UPF0082 family | Cytoplasmicf | ||
| yegR | 13.33 | 5E-3 | P76406 | Unknown function | Inner membranef | ||
|
yegZ
|
4.08
|
2E-2 |
AE000298c
|
Similar to P10312 D protein GPD Bacteriophage
P2
|
Cytoplasmicd
|
||
|
yehA
|
6.32
|
5E-2 |
Unknown function
|
Cytoplasmic probable
|
|||
| yeiM | 1.8 | 5E-02 | P33024 | Similar to VC2352. NupC family protein (Vibrio cholerae) | inner membrane | ||
| yejO | -1.78 | 5E-02 | P33924 | Similar to AJ006152 Pertactin (Bordetella pertussis) | outer membrane | ||
| yfcB | -1.2 | 3E-02 | P39199 | Similar to AAF95263.1. adenine-specific methylase. putative (Vibrio cholerae) | Cytoplasmic | ||
| yfcD | -1.47 | 3E-02 | P76494 | Similar ytAL096811) putative NTP pyrophosphohydrolase (Streptomyces coelicolor) | Cytoplasmic | ||
| yfdH | 2.34 | 3E-02 | P77293 | Similar to AL096811. putative NTP pyrophosphohydrolase (Streptomyces coelicolor) | inner membrane | ||
|
yfdW
|
8.08
|
1E-2 |
Similar to U82167 formyl-CoA transferase (Oxalobacter
formigenes)
|
Cytoplasmicd
|
|||
|
yfiA
|
3.72
|
4E-2 |
Similar to U32711. sigma54 modulation protein.
putative (Haemophilus influenzae)
|
Cytoplasmicd
|
|||
|
ygaP
|
6.22
|
5E-2 |
Similar to P73801 hypothetical protein (Synechocystis
sp).
|
Inner membraned
|
|||
|
ygbF
|
22.95b
|
2E-2 |
Unknown function
|
Cytoplasmicd
|
|||
| ygbT | 2.29 | 3E-2 | Q46896 | Unknown function | Cytoplasmicf | ||
|
ygcF
|
4.91
|
4E-2 |
Similar to D90908 hypothetical protein (Synechocystis
sp.)
|
Cytoplasmicd
|
|||
|
ygcJ
|
4.04
|
5E-2 |
Unknown function
|
Cytoplasmicd
|
|||
|
ygcK
|
4.35
|
2E-2 |
Unknown function
|
Cytoplasmicd
|
|||
|
ygcL
|
8.17
|
2E-2 |
Unknown function
|
Inner or Outer membraned
|
|||
| ygfK | -1.54 | 3E-02 | Q46811 | Putative oxidoreductase | inner membrane | ||
| yhaV | -1.51 | 1E-02 | P42901 | Function unknown | Cytoplasmic | ||
| yhcE | 2.07 | 5E-02 | P45421 | Function unknown; interrupted by IS5R | outer membrane | ||
| yhcS | -1.59 | 2E-02 | P45691 | Putative transcriptional regulator LYSR-type | Cytoplasmic | ||
| yhhH | 3.00 | 3E-02 | P28911 | Similar to P33668. YbbC hypothetical protein (Escherichia coli) | Periplasmic | ||
| yhhJ | 1.48 | 5E-02 | P31993 | Similar to AAG08615.1. probable permease of ABC transporter (Pseudomonas aeruginosa) | inner membrane | ||
|
yhhZ
|
2.56
|
5E-3 |
Similar to P80693 MajE. the major exported
protein (Pseudomonas syringae)
|
Extracellular probable
|
|||
| yhiE | 11.08 | 4E-4 | P29688 | Similar to P37195 YhiF hypothetical protein (Escherichia coli) | Cytoplasmicf | ||
| yhiF | 12.46 | 3E-2 | P37195 | Similar to P29688 YhiE hypothetical protein (Escherichia coli) | Inner membranef | ||
|
yhiM
|
17.51
|
4E-4
|
Unknown function
|
Inner membranef
|
|||
|
yhiW
|
32.41b
|
2E-2 |
Similar to P05052. AppY protein (Escherichia
coli)
PS00041: Bacterial regulatory proteins araC family signature |
Cytoplasmicd
|
|||
|
yhiX
|
13.92
|
4E-4 |
Similar to P10805. regulatory protein EnvY (Escherichia
coli)
PS00041: Bacterial regulatory proteins araC family signature |
Cytoplasmicd
|
|||
| yhjQ | -1.54 | 3E-02 | P37655 | Function unknown | Cytoplasmic | ||
| yibJ | 2.2 | 5E-02 | P32109 | Similar to RhsA | Cytoplasmic | ||
| yicO | 1.15 | 5E-02 | P31440 | Similar to AAG08105.1. probable transporter (Pseudomonas aeruginosa) | inner membrane | ||
| yjbB | -1.16 | 1E-02 | P32683 | Similar to AAG08858.1. conserved hypothetical protein (Pseudomonas aeruginosa) | Integral membrane | ||
|
yjdE
|
6.13
|
3E-2 |
Similar to P23891. probable cadaverine/lysine
antiporter (Escherichia coli)
|
Integral inner membrane probable
|
|||
| yjhC | 1.62 | 1E-02 | P39353 | Similar to AAG09709.1. unknown function (Pasteurella multocida) | Cytoplasmic | ||
|
yjhI
|
24.07b
|
4E-2 |
Similar to P76268. KdgR transcriptional
regulator (Escherichia coli)
PS01051: Bacterial regulatory proteins. iclR family signature |
Cytoplasmicd
|
|||
|
ykgB
|
40.86b
|
4E-2 |
Similar to gbAAB18029. hypothetical protein (Haemophilus
influenzae)
|
Integral inner membrane probable
|
|||
| ykgK | + | 5E-02 | P71301 | Similar to AF106566 RmbA (Salmonella typhimurium) | Cytoplasmic | ||
| ylbH | -1.75 | 2E-02 | Similar to RhsE | Cytoplasmic | |||
| ymfD | + | 2E-03 | P75967 | Function unknown | Cytoplasmic | ||
|
ynaE
|
6.14
|
4E-4 |
Similar to P76154 YdfK hypothetical protein (Escherichia
coli)
|
Cytoplasmicd
|
|||
|
yncI
|
15.30
|
9E-4 |
AE000243c
|
Similar to P28912 H repeat-associated protein (Escherichia
coli)
|
Inner membraned
|
||
| ynjE | -1.09 | 5E-02 | P78067 | Putative thiosulfate sulfur transferase | Periplasmic | ||
| ypjB | -1.45 | 5E-02 | P76612 | Function unknown | Cytoplasmic | ||
| yqfE | 1.63 | 1E-02 | P52038 | Function unknown | Cytoplasmic | ||
| yqhC | -1.47 | 4E-02 | Q46855 | Putative ARAC-type regulatory protein | Cytoplasmic | ||
| yqiH | -1.47 | 3E-02 | P77616 | Probable molecular chaperone | Periplasmic | ||
| zntA | -1.25 | 5E-02 | P37617 | Zn2+ translocating P-type ATPase; hypersensitive to Zn and Cd salts | Integral membrane |
The results were obtained from at least 4
hybridizations performed from 4 different RNA extractions. Only genes
with a P-value < 5 E-2 in a Wilcoxon statistical test are presented
in the table.
The expression ratio between wild-type and hns mutant indicated
by a in the 2d column were obtained from hybridizations performed with
probes generated from 10 µg RNA.
Genes whose expression is below the background in one strain are
indicated by d in the 3d column. Columns 4 and 5 correspond to the Acc.
number and the protein function, respectively, in Swissprot (http://www.uniprot.org/),TREMBL
ou Genebank databases.
The results of similarity searches performed with
the BlastP program against non-redundant databases are presented in
column 5. Protein cellular localization (column 6) was obtained either
from Niceprot database or was predicted (f) by the PSORT
program.
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